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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011476 through 18771 annotations produced 1 hits



lethal (3) neo43 (l(3)neo43):

Annotation Number : CG14865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011476
Gbrowse : chr3R:11103964-11104271 (-) // 100.0 //
Probeset : 1638155_at
Accessions : protein= NP_650443;, nucleotide= NM_142186;
Pathway : 0031966 // mitochondrial membrane // inferred from electronic annotation
FlyMine data for FBgn0011476.
VDRC has 3 RNAi stocks for FBgn0011476 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 54 of 4 1.40Up
Head70 44 of 4 0.90None
Eye65 64 of 4 0.89None
Thoracicoabdominal ganglion107 64 of 4 1.50Up
Salivary gland76 54 of 4 1.04None
Crop64 44 of 4 0.90None
Midgut36 24 of 4 0.50Down
Tubule45 34 of 4 0.60Down
Hindgut58 54 of 4 0.80None
Heart74 44 of 4 1.01None
Fat body104 64 of 4 1.42Up
Ovary102 84 of 4 1.40Up
Testis103 54 of 4 1.40Up
Male accessory glands62 34 of 4 0.80None
Virgin spermatheca86 54 of 4 1.17None
Mated spermatheca86 44 of 4 1.17None
Adult carcass95 14 of 4 1.30Up
Larval CNS72 54 of 4 0.98None
Larval Salivary gland83 44 of 4 1.12None
Larval midgut59 44 of 4 0.80None
Larval tubule38 34 of 4 0.50Down
Larval hindgut80 24 of 4 1.09None
Larval fat body46 64 of 4 0.60Down
Larval trachea55 44 of 4 0.75Down
Larval carcass44 54 of 4 0.60Down
S2 cells (growing)41 24 of 4 0.56Down
Whole fly73 44 of 4

Looking for FBgn0011476. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime