FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011509 through 18771 annotations produced 1 hits

chr3L:8712366-8713317 (-) // 100.0 // (Signal recognition particle receptor beta):

Annotation Number : CG33162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630713_at
Accessions : protein= , nucleotide= NP_788485;
Pathway : 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from sequence or structural similarit
Interpro : 0005785 // signal recognition particle receptor complex // inferred from sequence or structural similarity
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	71 ± 2	4 of 4	0.80	None
Head	60 ± 10	4 of 4	0.60	Down
Eye	65 ± 1	4 of 4	0.69	Down
Thoracicoabdominal ganglion	68 ± 2	4 of 4	0.70	None
Salivary gland	398 ± 15	4 of 4	4.22	Up
Crop	72 ± 2	4 of 4	0.80	None
Midgut	103 ± 3	4 of 4	1.10	None
Tubule	20 ± 2	0 of 4	0.20	Down
Hindgut	70 ± 3	4 of 4	0.70	None
Heart	112 ± 6	4 of 4	1.19	None
Fat body	125 ± 6	4 of 4	1.33	Up
Ovary	131 ± 5	4 of 4	1.40	Up
Testis	22 ± 2	4 of 4	0.20	Down
Male accessory glands	365 ± 8	4 of 4	3.90	Up
Virgin spermatheca	50 ± 6	4 of 4	0.54	Down
Mated spermatheca	73 ± 8	4 of 4	0.78	None
Adult carcass	88 ± 6	4 of 4	0.90	None
Larval CNS	86 ± 10	4 of 4	0.91	None
Larval Salivary gland	576 ± 35	4 of 4	6.11	Up
Larval midgut	102 ± 12	4 of 4	1.08	None
Larval tubule	73 ± 2	4 of 4	0.80	None
Larval hindgut	109 ± 3	4 of 4	1.16	None
Larval fat body	94 ± 11	4 of 4	1.00	None
Larval trachea	218 ± 61	4 of 4	2.32	Up
Larval carcass	159 ± 10	4 of 4	1.69	Up
S2 cells (growing)	737 ± 6	4 of 4	7.82	Up
Whole fly	94 ± 9	4 of 4

Looking for FBgn0011509. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720