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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011556 through 18771 annotations produced 1 hits



zetaTrypsin (zetaTry):

Annotation Number : CG12387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011556
Gbrowse : chr2R:7226687-7227633 (-) // 100.0 //
Probeset : 1635815_at
Accessions : protein= NP_523691;, nucleotide= NM_078967;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0011556.
BDGP gene expression has embryonic in situ data for zetaTry: 4 pix of staining in 1 body parts.
Homophila reports that CG12387 is a close match (1e-15) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG12387 interacts with CG5325 CG5372 .
VDRC has 3 RNAi stocks for FBgn0011556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye5 ± 12 of 4 0.02Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.00Down
Salivary gland10 ± 41 of 4 0.04Down
Crop4 ± 00 of 4 0.00Down
Midgut1424 ± 1724 of 4 6.10Up
Tubule57 ± 461 of 4 0.20Down
Hindgut1155 ± 804 of 4 4.90Up
Heart1 ± 00 of 4 0.01Down
Fat body5 ± 30 of 4 0.03Down
Ovary3 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands9 ± 30 of 4 0.00Down
Virgin spermatheca6 ± 11 of 4 0.03Down
Mated spermatheca9 ± 10 of 4 0.04Down
Adult carcass8 ± 30 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut2162 ± 854 of 4 9.19Up
Larval tubule9 ± 31 of 4 0.00Down
Larval hindgut673 ± 854 of 4 2.86Up
Larval fat body6 ± 20 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.02Down
Larval carcass6 ± 20 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly235 ± 474 of 4

Looking for FBgn0011556. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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