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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011559 through 18771 annotations produced 1 hits



chr2L:18356112-18359026 (-) // 100.0 // (36DE accessory gland protein):

Annotation Number : CG7157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628459_at
Accessions : protein= , nucleotide= NP_523594;
Pathway : "0007321 // sperm displacement // non-traceable author statement /// 0007610 // behavior // inferred from electronic ann
Interpro : post-mating // non-traceable author statement /// 0046692 // sperm competition // inferred from direct assay /// 004669
FlyMine data for full length.
BioGrid reports that CG7157 interacts with CG8609 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head6 12 of 4 0.00Down
Eye6 02 of 4 0.00Down
Thoracicoabdominal ganglion4 11 of 4 0.00Down
Salivary gland13 12 of 4 0.01Down
Crop5 12 of 4 0.00Down
Midgut7 11 of 4 0.00Down
Tubule6 11 of 4 0.00Down
Hindgut4 12 of 4 0.00Down
Heart4 01 of 4 0.00Down
Fat body10 14 of 4 0.01Down
Ovary12 71 of 4 0.00Down
Testis183 704 of 4 0.10Down
Male accessory glands13486 4394 of 4 7.50Up
Virgin spermatheca9 03 of 4 0.01Down
Mated spermatheca9 14 of 4 0.01Down
Adult carcass166 514 of 4 0.10Down
Larval CNS5 21 of 4 0.00Down
Larval Salivary gland5 11 of 4 0.00Down
Larval midgut12 34 of 4 0.01Down
Larval tubule6 11 of 4 0.00Down
Larval hindgut4 11 of 4 0.00Down
Larval fat body13 33 of 4 0.00Down
Larval trachea9 52 of 4 0.01Down
Larval carcass4 11 of 4 0.00Down
S2 cells (growing)5 02 of 4 0.00Down
Whole fly1795 3554 of 4

Looking for FBgn0011559. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime