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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011570 through 18771 annotations produced 1 hits

capping protein (cpb):

Annotation Number : CG17158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011570
Gbrowse : chr2L:1704903-1706779 (+) // 100.0 //
Probeset : 1630572_at
Accessions : protein= NP_477005;, nucleotide= NM_057657;
Pathway : nurse cell to oocyte // inferred from mutant phenotype /// 0010591 // regulation of lamellipodium assembly // inferred
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
FlyMine data for FBgn0011570.
BDGP gene expression has embryonic in situ data for cpb: 18 pix of staining in 15 body parts.
BioGrid reports that CG17158 interacts with CG17744 CG1847 CG3195 CG3661 CG40049 CG4087 CG4183 CG4879 CG5537 CG6284 CG6519 CG6533 CG6647 CG7254 CG7471 CG8177 CG8900 .
TRiP has 1 RNAi stocks for FBgn0011570 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011570 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 34 of 4 0.70Down
Head157 24 of 4 0.60Down
Eye190 54 of 4 0.69Down
Thoracicoabdominal ganglion154 34 of 4 0.60Down
Salivary gland445 204 of 4 1.61Up
Crop384 94 of 4 1.40Up
Midgut428 84 of 4 1.50Up
Tubule320 204 of 4 1.20Up
Hindgut356 34 of 4 1.30Up
Heart218 64 of 4 0.79Down
Fat body104 64 of 4 0.38Down
Ovary450 64 of 4 1.60Up
Testis108 34 of 4 0.40Down
Male accessory glands422 144 of 4 1.50Up
Virgin spermatheca127 44 of 4 0.46Down
Mated spermatheca138 64 of 4 0.50Down
Adult carcass141 34 of 4 0.50Down
Larval CNS418 104 of 4 1.51Up
Larval Salivary gland720 94 of 4 2.60Up
Larval midgut667 234 of 4 2.41Up
Larval tubule876 164 of 4 3.20Up
Larval hindgut584 104 of 4 2.11Up
Larval fat body558 524 of 4 2.00Up
Larval trachea491 374 of 4 1.78Up
Larval carcass565 294 of 4 2.04Up
S2 cells (growing)1454 164 of 4 5.25Up
Whole fly277 84 of 4

Looking for FBgn0011570. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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