FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011573 through 18771 annotations produced 1 hits

cdc37 protein (Cdc37):

Annotation Number : CG12019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011573
Gbrowse : chr3L:1795425-1797307 (+) // 100.0 //
Probeset : 1630283_at
Accessions : protein= NP_477006;, nucleotide= NM_057658;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0030296 // protein tyrosine kinase activator activi
FlyMine data for FBgn0011573.
BioGrid reports that CG12019 interacts with CG9326 CG15631 CG6632 CG18085 CG8416 CG5363 CG8328 CG15006 CG13558 CG2948 CG17508 CG10233 CG5241 CG3640 CG12393 CG4379 CG1034 CG10539 CG13991 CG11711 CG9770 CG4244 CG12072 CG14215 CG18572 CG12182 CG3068 .
TRiP has 2 RNAi stocks for FBgn0011573 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011573 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	241 ± 5	4 of 4	0.70	Down
Head	273 ± 10	4 of 4	0.80	Down
Eye	391 ± 10	4 of 4	1.17	Up
Thoracicoabdominal ganglion	231 ± 7	4 of 4	0.70	Down
Salivary gland	216 ± 4	4 of 4	0.65	Down
Crop	391 ± 8	4 of 4	1.20	Up
Midgut	252 ± 10	4 of 4	0.80	Down
Tubule	430 ± 14	4 of 4	1.30	Up
Hindgut	327 ± 6	4 of 4	1.00	None
Heart	259 ± 16	4 of 4	0.78	Down
Fat body	232 ± 31	4 of 4	0.70	Down
Ovary	461 ± 6	4 of 4	1.40	Up
Testis	502 ± 9	4 of 4	1.50	Up
Male accessory glands	194 ± 6	4 of 4	0.60	Down
Virgin spermatheca	420 ± 19	4 of 4	1.26	Up
Mated spermatheca	410 ± 28	4 of 4	1.23	None
Adult carcass	265 ± 8	4 of 4	0.80	Down
Larval CNS	379 ± 22	4 of 4	1.14	Up
Larval Salivary gland	303 ± 13	4 of 4	0.91	None
Larval midgut	200 ± 3	4 of 4	0.60	Down
Larval tubule	484 ± 2	4 of 4	1.50	Up
Larval hindgut	336 ± 11	4 of 4	1.01	None
Larval fat body	434 ± 12	4 of 4	1.30	Up
Larval trachea	471 ± 23	4 of 4	1.41	Up
Larval carcass	319 ± 14	4 of 4	0.96	None
S2 cells (growing)	464 ± 5	4 of 4	1.39	Up
Whole fly	333 ± 13	4 of 4

Looking for FBgn0011573. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720