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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011576 through 18771 annotations produced 1 hits



Cytochrome P450 4D2 (Cyp4d2):

Annotation Number : CG3466
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011576
Gbrowse : chrX:2070923-2072767 (+) // 100.0 //
Probeset : 1636793_at
Accessions : protein= NP_525043;, nucleotide= NM_080304;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0011576.
BDGP gene expression has embryonic in situ data for Cyp4d2: 4 pix of staining in 1 body parts.
Homophila reports that CG3466 is a close match (6e-12) to human gene CYP2C8 (NP_000761), a gene associated with Rhabdomyolysis, cerivastatin-induced (3).
VDRC has 2 RNAi stocks for FBgn0011576 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 34 of 4 0.40Down
Head217 ± 94 of 4 2.80Up
Eye195 ± 104 of 4 2.50Up
Thoracicoabdominal ganglion34 ± 24 of 4 0.40Down
Salivary gland71 ± 54 of 4 0.92None
Crop185 ± 64 of 4 2.40Up
Midgut99 ± 104 of 4 1.30None
Tubule936 ± 734 of 412.00Up
Hindgut243 ± 104 of 4 3.10Up
Heart213 ± 104 of 4 2.72Up
Fat body346 ± 174 of 4 4.42Up
Ovary5 ± 12 of 4 0.10Down
Testis28 ± 24 of 4 0.40Down
Male accessory glands65 ± 34 of 4 0.80None
Virgin spermatheca222 ± 24 of 4 2.85Up
Mated spermatheca196 ± 134 of 4 2.51Up
Adult carcass289 ± 224 of 4 3.70Up
Larval CNS10 ± 24 of 4 0.13Down
Larval Salivary gland20 ± 14 of 4 0.26Down
Larval midgut542 ± 1044 of 4 6.92Up
Larval tubule405 ± 234 of 4 5.20Up
Larval hindgut105 ± 64 of 4 1.34Up
Larval fat body512 ± 974 of 4 6.50Up
Larval trachea16 ± 54 of 4 0.21Down
Larval carcass22 ± 14 of 4 0.29Down
S2 cells (growing)17 ± 24 of 4 0.23Down
Whole fly78 ± 64 of 4

Looking for FBgn0011576. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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