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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011586 through 18771 annotations produced 1 hits



enhancer of rudimentary (e(r)):

Annotation Number : CG1871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011586
Gbrowse : chrX:8798760-8800277 (-) // 100.0 //
Probeset : 1633549_s_at
Accessions : protein= NP_524662; /// NP_727293;, nucleotide= NM_079923; /// NM_167171;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0030528 // transcription regulator activity // non-
FlyMine data for FBgn0011586.
BioGrid reports that CG1871 interacts with CG7354 CG8929 CG3689 CG3929 CG8831 CG18572 Dmel CG34380 .
VDRC has 4 RNAi stocks for FBgn0011586 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain427 ± 44 of 4 1.10None
Head316 ± 184 of 4 0.80Down
Eye966 ± 224 of 4 2.44Up
Thoracicoabdominal ganglion506 ± 214 of 4 1.30Up
Salivary gland367 ± 264 of 4 0.93None
Crop579 ± 194 of 4 1.50Up
Midgut194 ± 24 of 4 0.50Down
Tubule89 ± 14 of 4 0.20Down
Hindgut258 ± 54 of 4 0.70Down
Heart380 ± 84 of 4 0.96None
Fat body187 ± 114 of 4 0.47Down
Ovary869 ± 84 of 4 2.20Up
Testis221 ± 44 of 4 0.60Down
Male accessory glands769 ± 344 of 4 1.90Up
Virgin spermatheca92 ± 34 of 4 0.23Down
Mated spermatheca96 ± 54 of 4 0.24Down
Adult carcass183 ± 44 of 4 0.50Down
Larval CNS720 ± 214 of 4 1.82Up
Larval Salivary gland362 ± 114 of 4 0.92None
Larval midgut167 ± 64 of 4 0.42Down
Larval tubule396 ± 144 of 4 1.00None
Larval hindgut252 ± 104 of 4 0.64Down
Larval fat body505 ± 324 of 4 1.30Up
Larval trachea590 ± 544 of 4 1.49Up
Larval carcass272 ± 94 of 4 0.69Down
S2 cells (growing)553 ± 174 of 4 1.40Up
Whole fly395 ± 204 of 4

Looking for FBgn0011586. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime