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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011589 through 18771 annotations produced 1 hits



eag-like K[+] channel (elk):

Annotation Number : CG5076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011589
Gbrowse : chr2R:13761451-13813097 (+) // 100.0 //
Probeset : 1628097_at
Accessions : protein= NP_477009;, nucleotide= NM_057661;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation //
Interpro : 0008076 // voltage-gated potassium channel complex // non-traceable author statement /// 0016020 // membrane // inferred
FlyMine data for FBgn0011589.
Homophila reports that CG5076 is a close match (3e-20) to human gene ACHM2;CNG3;CNGA3 (NP_001289), a gene associated with Achromatopsia-2, 216900 (3).
TRiP has 1 RNAi stocks for FBgn0011589 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 34 of 4 5.70Up
Head13 22 of 4 1.50None
Eye5 10 of 4 0.60None
Thoracicoabdominal ganglion26 34 of 4 3.00Up
Salivary gland11 50 of 4 1.32None
Crop12 33 of 4 1.40None
Midgut21 23 of 4 2.40Up
Tubule3 00 of 4 0.40Down
Hindgut10 21 of 4 1.20None
Heart7 11 of 4 0.86None
Fat body9 20 of 4 1.13None
Ovary3 00 of 4 0.40Down
Testis9 21 of 4 1.00None
Male accessory glands22 14 of 4 2.60Up
Virgin spermatheca5 10 of 4 0.57None
Mated spermatheca5 10 of 4 0.59None
Adult carcass16 32 of 4 1.90None
Larval CNS21 34 of 4 2.47Up
Larval Salivary gland5 10 of 4 0.65None
Larval midgut18 11 of 4 2.09Up
Larval tubule11 00 of 4 1.30None
Larval hindgut15 14 of 4 1.76Up
Larval fat body8 20 of 4 0.90None
Larval trachea4 20 of 4 0.47Down
Larval carcass16 24 of 4 1.91Up
S2 cells (growing)11 12 of 4 1.35None
Whole fly8 12 of 4

Looking for FBgn0011589. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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