Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011591 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3L:20918982-20942609 (-) // 100.0 //):

Annotation Number : CG10580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-47
Gbrowse :
Probeset : 1623200_at
Accessions : protein= EC:2.4.1.- /// EC:2.4.1.222, nucleotide=
Interpro : "0001708 // cell fate specification // non-traceable author statement /// 0001745 // compound eye morphogenesis // infer
FlyMine data for chr3-47.
Homophila reports that CG10580 is a close match (4e-65) to human gene LFNG;SCDO3 (NP_001035258), a gene associated with Spondylocostal dysostosis, autosomal recessive 3, 609813 (3).
BioGrid reports that CG10580 interacts with CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG3619 CG3619 CG6127 CG6127 CG6127 CG6127 CG6127 CG6127 CG1771 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3938 CG31000 CG10601 CG33101 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain449 ± 124 of 4 5.50Up
Head314 ± 54 of 4 3.90Up
Eye327 ± 174 of 4 4.02Up
Thoracicoabdominal ganglion729 ± 184 of 4 8.90Up
Salivary gland22 ± 61 of 4 0.27Down
Crop103 ± 14 of 4 1.30Up
Midgut51 ± 34 of 4 0.60Down
Tubule31 ± 13 of 4 0.40Down
Hindgut36 ± 24 of 4 0.40Down
Heart40 ± 34 of 4 0.50Down
Fat body20 ± 34 of 4 0.25Down
Ovary52 ± 44 of 4 0.60Down
Testis27 ± 24 of 4 0.30Down
Male accessory glands11 ± 12 of 4 0.10Down
Virgin spermatheca40 ± 54 of 4 0.50Down
Mated spermatheca45 ± 24 of 4 0.56Down
Adult carcass106 ± 94 of 4 1.30None
Larval CNS197 ± 134 of 4 2.43Up
Larval Salivary gland8 ± 21 of 4 0.11Down
Larval midgut79 ± 104 of 4 0.98None
Larval tubule40 ± 34 of 4 0.50Down
Larval hindgut166 ± 114 of 4 2.04Up
Larval fat body91 ± 114 of 4 1.10None
Larval trachea505 ± 634 of 4 6.20Up
Larval carcass81 ± 134 of 4 1.00None
S2 cells (growing)30 ± 24 of 4 0.37Down
Whole fly81 ± 24 of 4

Looking for FBgn0011591. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime