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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011596 through 18771 annotations produced 1 hits



fuzzy onions (fzo):

Annotation Number : CG4568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011596
Gbrowse : chr3R:19027357-19029756 (-) // 100.0 //
Probeset : 1630089_at
Accessions : protein= NP_732840;, nucleotide= NM_170060;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from d
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0011596.
Homophila reports that CG4568 is a close match (7e-90) to human gene CMT2A2;KIAA0214;MFN2 (NP_055689), a gene associated with Charcot-Marie-Tooth disease, type 2A2, 609260 (3);Hereditary motor and sensory neuropathy VI, 601152 (3).
BioGrid reports that CG4568 interacts with CG9588 CG4617 CG4820 CG5441 CG7386 CG7757 CG8933 .
VDRC has 3 RNAi stocks for FBgn0011596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 0.30Down
Head4 10 of 4 0.20Down
Eye4 00 of 4 0.18Down
Thoracicoabdominal ganglion5 00 of 4 0.20Down
Salivary gland8 20 of 4 0.36Down
Crop13 13 of 4 0.60Down
Midgut10 20 of 4 0.50Down
Tubule4 00 of 4 0.20Down
Hindgut12 04 of 4 0.60Down
Heart7 03 of 4 0.34Down
Fat body10 23 of 4 0.46Down
Ovary4 00 of 4 0.20Down
Testis389 74 of 417.10Up
Male accessory glands9 21 of 4 0.40Down
Virgin spermatheca6 11 of 4 0.30Down
Mated spermatheca6 00 of 4 0.27Down
Adult carcass16 22 of 4 0.70None
Larval CNS6 23 of 4 0.29Down
Larval Salivary gland9 11 of 4 0.43Down
Larval midgut7 01 of 4 0.33Down
Larval tubule11 12 of 4 0.50Down
Larval hindgut5 12 of 4 0.23Down
Larval fat body87 434 of 4 3.80None
Larval trachea5 30 of 4 0.25Down
Larval carcass5 01 of 4 0.24Down
S2 cells (growing)7 02 of 4 0.34Down
Whole fly22 24 of 4

Looking for FBgn0011596. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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