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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011603 through 18771 annotations produced 1 hits



inebriated (ine):

Annotation Number : CG15444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011603
Gbrowse : chr2L:4467985-4477024 (-) // 100.0 //
Probeset : 1627041_s_at
Accessions : protein= NP_001162871; /// NP_477012; /// NP_477013; /// NP_787972; /// NP_787973;, nucleotide= NM_001169400; /// NM_057664; /// NM_057665; /// NM_175958; /// NM_175959;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane
Interpro : 0005034 // osmosensor activity // inferred from mutant phenotype /// 0005328 // neurotransmitter:sodium symporter activi
FlyMine data for FBgn0011603.
BDGP gene expression has embryonic in situ data for ine: 12 pix of staining in 8 body parts.
Homophila reports that CG15444 is a close match (3e-87) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
BioGrid reports that CG15444 interacts with CG14472 CG8318 .
VDRC has 1 RNAi stocks for FBgn0011603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain345 64 of 4 4.20Up
Head202 74 of 4 2.50Up
Eye229 84 of 4 2.81Up
Thoracicoabdominal ganglion917 394 of 411.20Up
Salivary gland4827 1724 of 459.00Up
Crop48 44 of 4 0.60Down
Midgut74 24 of 4 0.90None
Tubule437 244 of 4 5.30Up
Hindgut2378 444 of 429.10Up
Heart29 44 of 4 0.36Down
Fat body39 94 of 4 0.48Down
Ovary3 10 of 4 0.00Down
Testis9 24 of 4 0.10Down
Male accessory glands24 11 of 4 0.30Down
Virgin spermatheca28 14 of 4 0.35Down
Mated spermatheca45 74 of 4 0.56Down
Adult carcass165 94 of 4 2.00Up
Larval CNS72 154 of 4 0.89None
Larval Salivary gland111 104 of 4 1.36None
Larval midgut119 74 of 4 1.46Up
Larval tubule183 124 of 4 2.20Up
Larval hindgut2420 1514 of 429.58Up
Larval fat body1 00 of 4 0.00Down
Larval trachea45 94 of 4 0.56Down
Larval carcass89 84 of 4 1.09None
S2 cells (growing)21 13 of 4 0.26Down
Whole fly81 44 of 4

Looking for FBgn0011603. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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