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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011638 through 18771 annotations produced 1 hits



ribonucleoprotein La (La):

Annotation Number : CG10922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011638
Gbrowse : chr2L:20348390-20350328 (-) // 100.0 //
Probeset : 1631149_s_at
Accessions : protein= NP_477014; /// NP_724257;, nucleotide= NM_057666; /// NM_165326;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0011638.
BDGP gene expression has embryonic in situ data for La: 18 pix of staining in 34 body parts.
BioGrid reports that CG10922 interacts with CG8610 CG11988 CG13474 CG1475 CG17158 CG4896 CG8182 CG33514 .
TRiP has 1 RNAi stocks for FBgn0011638 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 34 of 4 0.60Down
Head168 164 of 4 0.40Down
Eye249 114 of 4 0.66Down
Thoracicoabdominal ganglion254 154 of 4 0.70Down
Salivary gland177 124 of 4 0.47Down
Crop160 64 of 4 0.40Down
Midgut108 44 of 4 0.30Down
Tubule66 104 of 4 0.20Down
Hindgut136 14 of 4 0.40Down
Heart179 164 of 4 0.47Down
Fat body213 234 of 4 0.56Down
Ovary605 114 of 4 1.60Up
Testis82 24 of 4 0.20Down
Male accessory glands196 134 of 4 0.50Down
Virgin spermatheca152 74 of 4 0.40Down
Mated spermatheca227 274 of 4 0.60Down
Adult carcass137 64 of 4 0.40Down
Larval CNS621 324 of 4 1.64Up
Larval Salivary gland308 214 of 4 0.81None
Larval midgut118 144 of 4 0.31Down
Larval tubule65 34 of 4 0.20Down
Larval hindgut241 294 of 4 0.64Down
Larval fat body63 104 of 4 0.20Down
Larval trachea421 924 of 4 1.11None
Larval carcass323 704 of 4 0.85None
S2 cells (growing)725 64 of 4 1.91Up
Whole fly379 374 of 4

Looking for FBgn0011638. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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