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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011640 through 18771 annotations produced 1 hits



lark (lark):

Annotation Number : CG8597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011640
Gbrowse : chr3L:7331443-7335003 (+) // 100.0 //
Probeset : 1628340_s_at
Accessions : protein= NP_523957; /// NP_729237; /// NP_729238; /// NP_729239; /// NP_729240;, nucleotide= NM_079233; /// NM_168202; /// NM_168203; /// NM_168204; /// NM_168205;
Pathway : via spliceosome // inferred by curator /// 0007303 // cytoplasmic transport
Interpro : nurse cell to oocyte // inferred from mutant phenotype /// 0007562 // eclosion // traceable author statement /// 000762
FlyMine data for FBgn0011640.
BDGP gene expression has embryonic in situ data for lark: 4 pix of staining in 1 body parts.
BioGrid reports that CG8597 interacts with CG8997 CG9277 CG9876 CG9930 .
TRiP has 1 RNAi stocks for FBgn0011640 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011640 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain624 204 of 4 1.70Up
Head285 84 of 4 0.80Down
Eye486 144 of 4 1.34Up
Thoracicoabdominal ganglion418 44 of 4 1.10Up
Salivary gland493 34 of 4 1.35Up
Crop396 214 of 4 1.10None
Midgut313 74 of 4 0.90Down
Tubule316 24 of 4 0.90Down
Hindgut357 54 of 4 1.00None
Heart297 64 of 4 0.82Down
Fat body277 84 of 4 0.76Down
Ovary725 234 of 4 2.00Up
Testis195 64 of 4 0.50Down
Male accessory glands473 284 of 4 1.30Up
Virgin spermatheca238 104 of 4 0.66Down
Mated spermatheca252 154 of 4 0.69Down
Adult carcass306 74 of 4 0.80Down
Larval CNS1026 374 of 4 2.82Up
Larval Salivary gland499 244 of 4 1.37Up
Larval midgut343 54 of 4 0.94None
Larval tubule309 74 of 4 0.80Down
Larval hindgut488 194 of 4 1.34Up
Larval fat body495 204 of 4 1.40Up
Larval trachea517 384 of 4 1.42Up
Larval carcass454 264 of 4 1.25Up
S2 cells (growing)609 154 of 4 1.67Up
Whole fly364 114 of 4

Looking for FBgn0011640. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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