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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011642 through 18771 annotations produced 1 hits



Zyx102EF (Zyx102EF):

Annotation Number : CG32018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011642
Gbrowse : chr4:1077990-1081542 (-) // 99.55 //
Probeset : 1627216_s_at
Accessions : protein= NP_652015; /// NP_726638; /// NP_726639; /// NP_726640; /// NP_726641; /// NP_726642; /// NP_726643;, nucleotide= NM_143758; /// NM_166815; /// NM_166816; /// NM_166817; /// NM_166818; /// NM_166819; /// NM_166820;
Pathway : 0005856 // cytoskeleton // inferred from sequence or structural similarity
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0011642.
Homophila reports that CG32018 is a close match (2e-12) to human gene FHL1;SLIM1;XMPMA (NP_001440), a gene associated with Myopathy, reducing body, X-linked, severe early-onset, 300717 (3), Myopathy, reducing body, X-linked, childhood-onset, 300718 (3);Myopathy, X-linked, with postural muscle atrophy, 300696 (3);Scapuloperoneal myopathy, X-linked dominant, 300695 (3).
BioGrid reports that CG32018 interacts with CG4303 CG9163 CG9654 .
TRiP has 2 RNAi stocks for FBgn0011642 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain980 204 of 4 3.90Up
Head430 214 of 4 1.70Up
Eye592 274 of 4 2.35Up
Thoracicoabdominal ganglion946 144 of 4 3.70Up
Salivary gland313 114 of 4 1.24Up
Crop312 104 of 4 1.20Up
Midgut244 54 of 4 1.00None
Tubule383 194 of 4 1.50Up
Hindgut237 74 of 4 0.90None
Heart309 64 of 4 1.22Up
Fat body284 214 of 4 1.13None
Ovary294 64 of 4 1.20Up
Testis167 24 of 4 0.70Down
Male accessory glands264 64 of 4 1.00None
Virgin spermatheca508 394 of 4 2.01Up
Mated spermatheca540 274 of 4 2.14Up
Adult carcass223 134 of 4 0.90None
Larval CNS707 344 of 4 2.80Up
Larval Salivary gland325 24 of 4 1.29Up
Larval midgut188 64 of 4 0.75Down
Larval tubule410 104 of 4 1.60Up
Larval hindgut253 104 of 4 1.00None
Larval fat body336 114 of 4 1.30Up
Larval trachea443 164 of 4 1.76Up
Larval carcass328 114 of 4 1.30Up
S2 cells (growing)251 14 of 4 1.00None
Whole fly252 114 of 4

Looking for FBgn0011642. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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