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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011648 through 18771 annotations produced 1 hits



chr2L:3146483-3159630 (-) // 100.0 // (Mothers against Decapentaplegic):

Annotation Number : CG12399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634683_at
Accessions : protein= , nucleotide= NP_477017;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0006350 // transcription // inferred from e
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for full length.
Homophila reports that CG12399 is a close match (4e-19) to human gene SMAD7;MADH7;CRCS3 (NP_005895), a gene associated with {Colorectal cancer, susceptiblity to, 3}, 612229 (3).
BioGrid reports that CG12399 interacts with CG5903 CG8993 CG13576 CG1472 CG15177 CG3779 CG4795 CG6576 CG6720 CG6891 CG9554 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG1891 CG1891 CG1891 CG17579 CG9224 CG14026 CG14026 CG14026 CG14026 CG1389 CG5201 CG1046 CG33188 CG1034 CG13510 CG13701 CG8993 CG2948 CG6235 CG11525 CG18745 CG32428 CG4673 CG7602 CG11849 CG6549 CG10021 CG4184 CG13900 CG17964 CG4057 CG8532 CG4244 CG6369 CG3093 CG12189 CG33109 CG4943 CG13512 CG12436 CG31534 CG1775 CG9027 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 ± 64 of 4 0.60Down
Head131 ± 74 of 4 0.50Down
Eye83 ± 74 of 4 0.34Down
Thoracicoabdominal ganglion145 ± 54 of 4 0.60Down
Salivary gland194 ± 54 of 4 0.79Down
Crop146 ± 64 of 4 0.60Down
Midgut279 ± 34 of 4 1.10None
Tubule127 ± 54 of 4 0.50Down
Hindgut119 ± 54 of 4 0.50Down
Heart170 ± 134 of 4 0.69Down
Fat body314 ± 214 of 4 1.27Up
Ovary524 ± 114 of 4 2.10Up
Testis77 ± 54 of 4 0.30Down
Male accessory glands168 ± 84 of 4 0.70Down
Virgin spermatheca243 ± 264 of 4 0.99None
Mated spermatheca248 ± 194 of 4 1.00None
Adult carcass150 ± 84 of 4 0.60Down
Larval CNS231 ± 104 of 4 0.94None
Larval Salivary gland183 ± 104 of 4 0.74Down
Larval midgut336 ± 64 of 4 1.36Up
Larval tubule203 ± 74 of 4 0.80Down
Larval hindgut163 ± 74 of 4 0.66Down
Larval fat body235 ± 124 of 4 1.00None
Larval trachea125 ± 74 of 4 0.51Down
Larval carcass215 ± 184 of 4 0.87None
S2 cells (growing)126 ± 64 of 4 0.51Down
Whole fly247 ± 114 of 4

Looking for FBgn0011648. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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