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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011653 through 18771 annotations produced 1 hits



masquerade (mas):

Annotation Number : CG15002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011653
Gbrowse : chr3L:4161653-4167461 (-) // 100.0 //
Probeset : 1639190_at
Accessions : protein= NP_523919;, nucleotide= NM_079195;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0011653.
BDGP gene expression has embryonic in situ data for mas: 59 pix of staining in 23 body parts.
Homophila reports that CG15002 is a close match (5e-12) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 2 RNAi stocks for FBgn0011653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10None
Head3 ± 10 of 4 0.50None
Eye6 ± 10 of 4 0.87None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20None
Salivary gland13 ± 60 of 4 1.87None
Crop7 ± 10 of 4 1.00None
Midgut5 ± 20 of 4 0.70None
Tubule4 ± 10 of 4 0.60Down
Hindgut2 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.26None
Fat body2 ± 10 of 4 0.36None
Ovary1 ± 00 of 4 0.20None
Testis7 ± 41 of 4 1.00None
Male accessory glands8 ± 40 of 4 1.20None
Virgin spermatheca2 ± 00 of 4 0.41None
Mated spermatheca2 ± 00 of 4 0.33None
Adult carcass11 ± 20 of 4 1.60None
Larval CNS95 ± 94 of 413.27Up
Larval Salivary gland4 ± 10 of 4 0.60None
Larval midgut9 ± 10 of 4 1.28None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut26 ± 22 of 4 3.69Up
Larval fat body7 ± 20 of 4 1.10None
Larval trachea32 ± 74 of 4 4.47Up
Larval carcass27 ± 11 of 4 3.80Up
S2 cells (growing)2 ± 00 of 4 0.39None
Whole fly7 ± 20 of 4

Looking for FBgn0011653. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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