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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011656 through 18771 annotations produced 4 hits



chr2R:5806638-5846313 (-) // 100.0 // (Complementation group C):

Annotation Number : CG1429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636222_at
Accessions : protein= , nucleotide= NP_477018; /// NP_477019; /// NP_477020; /// NP_477021; /// NP_995789;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG1429 is a close match (2e-48) to human gene MEF2A;ADCAD1 (NP_005578), a gene associated with Coronary artery disease, autosomal dominant, 1, 608320 (3).
BioGrid reports that CG1429 interacts with CG32451 CG5102 CG10798 CG3978 CG3938 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 3.00None
Head6 11 of 4 3.00Up
Eye3 10 of 4 1.55None
Thoracicoabdominal ganglion5 10 of 4 2.40None
Salivary gland25 73 of 411.87Up
Crop11 33 of 4 5.40None
Midgut2 10 of 4 1.20None
Tubule4 00 of 4 2.10Up
Hindgut7 03 of 4 3.50Up
Heart2 00 of 4 1.07None
Fat body25 74 of 412.00Up
Ovary1 00 of 4 0.70None
Testis2 01 of 4 1.00None
Male accessory glands7 22 of 4 3.70None
Virgin spermatheca6 01 of 4 2.82Up
Mated spermatheca10 24 of 4 4.94None
Adult carcass7 20 of 4 3.40None
Larval CNS10 34 of 4 4.95Up
Larval Salivary gland12 14 of 4 5.87Up
Larval midgut4 00 of 4 2.00Up
Larval tubule9 13 of 4 4.30Up
Larval hindgut4 12 of 4 2.18None
Larval fat body4 11 of 4 2.10None
Larval trachea4 12 of 4 1.95Up
Larval carcass3 11 of 4 1.48None
S2 cells (growing)275 134 of 4129.84Up
Whole fly2 00 of 4



March 2006 (FlyBase/BDGP 5.3) (chr3L:1506053-1513593 (+) // 99.78 // /// chr3L:24190145-24218437 (+) // 98.79 // /// chr2RHet:853622-861122 (+) // 99.74 // /// chr3LHet:1121680-1672151 (+) // 99.11 // /// chr3R:6629949-6637424 (+) // 99.23 // /// chr2R:6835587-6843081 (+) // 99.7 // /// chr2R:5614173-5621667 (+) // 99.58 // /// chr3L:10053266-11264513 (-) // 99.8 // /// chr3L:23817948-23825333 (-) // 95.83 // /// chr3L:23065380-23072702 (-) // 95.15 // /// chr3L:20320878-20327985 (-) // 90.51 // /// chr2RHet:1464324-1471764 (-) // 97.69 // /// chr3RHet:153628-161056 (-) // 98.14 // /// chr3RHet:58665-154160 (-) // 97.26 // /// chr2R:1789717-1797219 (-) // 99.76 // /// chrX:3647507-3655005 (-) // 99.78 // /// chrU:239746-1307049 (-) // 96.67 //):

Annotation Number : X01472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1626392_s_at
Accessions : protein= , nucleotide=
Interpro : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain607 94 of 4 8.80Up
Head212 244 of 4 3.10Up
Eye437 354 of 4 6.38Up
Thoracicoabdominal ganglion386 224 of 4 5.60Up
Salivary gland137 214 of 4 2.00Up
Crop362 314 of 4 5.30Up
Midgut60 44 of 4 0.90None
Tubule47 24 of 4 0.70Down
Hindgut111 14 of 4 1.60Up
Heart103 44 of 4 1.51Up
Fat body358 944 of 4 5.22Up
Ovary17 23 of 4 0.20Down
Testis295 214 of 4 4.30Up
Male accessory glands196 144 of 4 2.90Up
Virgin spermatheca185 24 of 4 2.70Up
Mated spermatheca285 584 of 4 4.15Up
Adult carcass128 64 of 4 1.90Up
Larval CNS733 684 of 410.69Up
Larval Salivary gland93 84 of 4 1.36None
Larval midgut86 14 of 4 1.25None
Larval tubule48 54 of 4 0.70None
Larval hindgut106 104 of 4 1.55Up
Larval fat body100 264 of 4 1.50None
Larval trachea194 114 of 4 2.84Up
Larval carcass123 184 of 4 1.79None
S2 cells (growing)4380 164 of 463.84Up
Whole fly68 64 of 4



chr2R:5806638-5846313 (-) // 100.0 // (Complementation group C):

Annotation Number : CG1429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626900_a_at
Accessions : protein= , nucleotide= NP_477018; /// NP_477019; /// NP_477020; /// NP_477021; /// NP_995789;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG1429 is a close match (2e-48) to human gene MEF2A;ADCAD1 (NP_005578), a gene associated with Coronary artery disease, autosomal dominant, 1, 608320 (3).
BioGrid reports that CG1429 interacts with CG32451 CG5102 CG10798 CG3978 CG3938 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 11 of 4 0.70None
Head9 20 of 4 0.70None
Eye2 10 of 4 0.16Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland8 10 of 4 0.64None
Crop33 44 of 4 2.50Up
Midgut14 10 of 4 1.10None
Tubule3 00 of 4 0.30Down
Hindgut16 11 of 4 1.20None
Heart8 00 of 4 0.63Down
Fat body10 20 of 4 0.75None
Ovary8 00 of 4 0.60Down
Testis3 10 of 4 0.30Down
Male accessory glands8 20 of 4 0.60None
Virgin spermatheca2 00 of 4 0.19Down
Mated spermatheca6 10 of 4 0.48Down
Adult carcass21 20 of 4 1.60Up
Larval CNS4 10 of 4 0.35Down
Larval Salivary gland13 00 of 4 1.02None
Larval midgut9 20 of 4 0.68None
Larval tubule7 20 of 4 0.50None
Larval hindgut6 10 of 4 0.49Down
Larval fat body12 10 of 4 0.90None
Larval trachea3 20 of 4 0.29Down
Larval carcass12 21 of 4 0.94None
S2 cells (growing)87 34 of 4 6.52Up
Whole fly13 00 of 4



chr2R:5803006-5817102 (-) // 100.0 // (Complementation group C):

Annotation Number : CG1429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628385_a_at
Accessions : protein= , nucleotide= NP_477018; /// NP_477019; /// NP_477020; /// NP_477021; /// NP_995789;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG1429 is a close match (2e-48) to human gene MEF2A;ADCAD1 (NP_005578), a gene associated with Coronary artery disease, autosomal dominant, 1, 608320 (3).
BioGrid reports that CG1429 interacts with CG32451 CG5102 CG10798 CG3978 CG3938 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 24 of 4 0.60Down
Head175 64 of 4 1.00None
Eye179 84 of 4 1.02None
Thoracicoabdominal ganglion80 24 of 4 0.50Down
Salivary gland187 74 of 4 1.06None
Crop574 104 of 4 3.30Up
Midgut190 34 of 4 1.10None
Tubule172 134 of 4 1.00None
Hindgut370 54 of 4 2.10Up
Heart206 204 of 4 1.17None
Fat body184 154 of 4 1.04None
Ovary175 44 of 4 1.00None
Testis22 14 of 4 0.10Down
Male accessory glands100 54 of 4 0.60Down
Virgin spermatheca950 404 of 4 5.38Up
Mated spermatheca1109 1244 of 4 6.28Up
Adult carcass339 144 of 4 1.90Up
Larval CNS85 44 of 4 0.49Down
Larval Salivary gland1013 494 of 4 5.73Up
Larval midgut263 64 of 4 1.49Up
Larval tubule133 14 of 4 0.80None
Larval hindgut297 94 of 4 1.68Up
Larval fat body93 54 of 4 0.50Down
Larval trachea162 134 of 4 0.92None
Larval carcass692 704 of 4 3.92Up
S2 cells (growing)32 14 of 4 0.18Down
Whole fly176 154 of 4

Looking for FBgn0011656. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime