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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011659 through 18771 annotations produced 1 hits



Mlh1 (Mlh1):

Annotation Number : CG11482
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011659
Gbrowse : chr2R:4057540-4059907 (+) // 100.0 //
Probeset : 1625500_at
Accessions : protein= NP_477022;, nucleotide= NM_057674;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from ele
FlyMine data for FBgn0011659.
Homophila reports that CG11482 is a close match (3e-21) to human gene HNPCC7;MLH3 (NP_055196), a gene associated with Colon cancer, hereditary nonpolypopsis, type 7 (3);Colorectal cancer, somatic, 114500 (3).
BioGrid reports that CG11482 interacts with CG13379 CG9493 .
TRiP has 1 RNAi stocks for FBgn0011659 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011659 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.30Down
Head17 ± 24 of 4 0.30Down
Eye9 ± 03 of 4 0.16Down
Thoracicoabdominal ganglion27 ± 14 of 4 0.50Down
Salivary gland30 ± 32 of 4 0.52Down
Crop11 ± 12 of 4 0.20Down
Midgut19 ± 24 of 4 0.30Down
Tubule22 ± 14 of 4 0.40Down
Hindgut17 ± 24 of 4 0.30Down
Heart13 ± 14 of 4 0.24Down
Fat body11 ± 13 of 4 0.19Down
Ovary103 ± 14 of 4 1.80Up
Testis41 ± 24 of 4 0.70Down
Male accessory glands33 ± 24 of 4 0.60Down
Virgin spermatheca14 ± 11 of 4 0.24Down
Mated spermatheca20 ± 52 of 4 0.34Down
Adult carcass24 ± 23 of 4 0.40Down
Larval CNS55 ± 84 of 4 0.94None
Larval Salivary gland75 ± 24 of 4 1.28Up
Larval midgut14 ± 24 of 4 0.25Down
Larval tubule17 ± 04 of 4 0.30Down
Larval hindgut38 ± 14 of 4 0.65Down
Larval fat body17 ± 24 of 4 0.30Down
Larval trachea44 ± 34 of 4 0.76Down
Larval carcass32 ± 14 of 4 0.55Down
S2 cells (growing)102 ± 34 of 4 1.73Up
Whole fly59 ± 34 of 4

Looking for FBgn0011659. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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