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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011660 through 18771 annotations produced 1 hits



Pms2 (Pms2):

Annotation Number : CG8169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011660
Gbrowse : chr2R:11255576-11259021 (-) // 100.0 //
Probeset : 1641382_at
Accessions : protein= NP_477023;, nucleotide= NM_057675;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from ele
FlyMine data for FBgn0011660.
Homophila reports that CG8169 is a close match (7e-16) to human gene HNPCC7;MLH3 (NP_055196), a gene associated with Colon cancer, hereditary nonpolypopsis, type 7 (3);Colorectal cancer, somatic, 114500 (3).
VDRC has 2 RNAi stocks for FBgn0011660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 14 of 4 0.60Down
Head20 03 of 4 0.30Down
Eye18 12 of 4 0.25Down
Thoracicoabdominal ganglion57 44 of 4 0.80Down
Salivary gland9 40 of 4 0.13Down
Crop15 40 of 4 0.20Down
Midgut16 20 of 4 0.20Down
Tubule13 10 of 4 0.20Down
Hindgut13 21 of 4 0.20Down
Heart6 10 of 4 0.09Down
Fat body6 40 of 4 0.09Down
Ovary163 44 of 4 2.20Up
Testis125 24 of 4 1.70Up
Male accessory glands28 31 of 4 0.40Down
Virgin spermatheca8 00 of 4 0.12Down
Mated spermatheca12 20 of 4 0.17Down
Adult carcass17 10 of 4 0.20Down
Larval CNS85 64 of 4 1.18Up
Larval Salivary gland24 11 of 4 0.33Down
Larval midgut16 20 of 4 0.23Down
Larval tubule28 13 of 4 0.40Down
Larval hindgut23 13 of 4 0.32Down
Larval fat body41 143 of 4 0.60None
Larval trachea44 74 of 4 0.62Down
Larval carcass34 10 of 4 0.47Down
S2 cells (growing)113 14 of 4 1.57Up
Whole fly72 24 of 4

Looking for FBgn0011660. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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