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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011666 through 18771 annotations produced 1 hits



musashi (msi):

Annotation Number : CG5099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011666
Gbrowse : chr3R:21344044-21428143 (+) // 100.0 //
Probeset : 1638125_a_at
Accessions : protein= NP_524577; /// NP_733108;, nucleotide= NM_079838; /// NM_170229;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000900 // translation repressor activity
FlyMine data for FBgn0011666.
Homophila reports that CG5099 is a close match (3e-21) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
BioGrid reports that CG5099 interacts with CG5099 CG5278 CG5386 CG7111 CG7789 CG7809 CG8460 CG8947 CG9106 CG9184 CG6447 CG6478 CG9949 CG9949 CG1856 CG1856 .
VDRC has 2 RNAi stocks for FBgn0011666 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 24 of 4 0.50Down
Head43 ± 14 of 4 0.90None
Eye82 ± 54 of 4 1.73Up
Thoracicoabdominal ganglion19 ± 14 of 4 0.40Down
Salivary gland10 ± 31 of 4 0.22Down
Crop96 ± 34 of 4 2.00Up
Midgut14 ± 14 of 4 0.30Down
Tubule4 ± 00 of 4 0.10Down
Hindgut14 ± 14 of 4 0.30Down
Heart35 ± 34 of 4 0.74None
Fat body6 ± 22 of 4 0.14Down
Ovary70 ± 14 of 4 1.50Up
Testis12 ± 04 of 4 0.30Down
Male accessory glands15 ± 22 of 4 0.30Down
Virgin spermatheca16 ± 24 of 4 0.35Down
Mated spermatheca22 ± 34 of 4 0.47Down
Adult carcass52 ± 24 of 4 1.10None
Larval CNS189 ± 144 of 4 3.96Up
Larval Salivary gland17 ± 34 of 4 0.37Down
Larval midgut22 ± 34 of 4 0.47Down
Larval tubule9 ± 13 of 4 0.20Down
Larval hindgut15 ± 14 of 4 0.32Down
Larval fat body11 ± 13 of 4 0.20Down
Larval trachea87 ± 114 of 4 1.82Up
Larval carcass93 ± 234 of 4 1.95None
S2 cells (growing)250 ± 44 of 4 5.22Up
Whole fly48 ± 34 of 4

Looking for FBgn0011666. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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