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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011669 through 18771 annotations produced 1 hits


lethal (3) 02640 /// male specific transcript 57D (l(3)02640 /// Mst57Db):

Annotation Number : CG5016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011669
Gbrowse : chr3R:21656443-21656635 (-) // 100.0 //
Probeset : 1628649_at
Accessions : protein= NP_524499; /// NP_612103;, nucleotide= NM_079775; /// NM_138259;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0004418 // hydroxymethylbilane synthase activity // inferred from sequence or structural similarity /// 0004418 // hydro
FlyMine data for FBgn0011669.
VDRC has 1 RNAi stocks for FBgn0011669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye5 ± 20 of 4 0.00Down
Thoracicoabdominal ganglion11 ± 61 of 4 0.00Down
Salivary gland15 ± 30 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut7 ± 30 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut9 ± 40 of 4 0.00Down
Heart11 ± 20 of 4 0.00Down
Fat body11 ± 90 of 4 0.00Down
Ovary32 ± 311 of 4 0.00Down
Testis533 ± 2884 of 4 0.20Down
Male accessory glands9676 ± 3724 of 4 3.40Up
Virgin spermatheca6 ± 20 of 4 0.00Down
Mated spermatheca7 ± 10 of 4 0.00Down
Adult carcass577 ± 2273 of 4 0.20Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland5 ± 20 of 4 0.00Down
Larval midgut41 ± 122 of 4 0.01Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut11 ± 50 of 4 0.00Down
Larval fat body4 ± 30 of 4 0.00Down
Larval trachea4 ± 50 of 4 0.00Down
Larval carcass2 ± 10 of 4 0.00Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly2872 ± 1374 of 4

Looking for FBgn0011669. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime