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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011672 through 18771 annotations produced 1 hits



malvolio (Mvl):

Annotation Number : CG3671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011672
Gbrowse : chr3R:16877278-16886517 (-) // 100.0 //
Probeset : 1624392_s_at
Accessions : protein= NP_001163668; /// NP_524425; /// NP_732584; /// NP_996251;, nucleotide= NM_001170197; /// NM_079701; /// NM_169944; /// NM_206529;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005375 // copper ion transmembrane transport
FlyMine data for FBgn0011672.
BDGP gene expression has embryonic in situ data for Mvl: 16 pix of staining in 7 body parts.
Homophila reports that CG3671 is a close match (2e-144) to human gene NRAMP2 (NP_000608), a gene associated with Anemia, hypochromic microcytic, 206100 (3).
VDRC has 2 RNAi stocks for FBgn0011672 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 ± 34 of 4 0.80None
Head103 ± 54 of 4 0.70Down
Eye52 ± 24 of 4 0.35Down
Thoracicoabdominal ganglion111 ± 54 of 4 0.70Down
Salivary gland568 ± 294 of 4 3.80Up
Crop88 ± 44 of 4 0.60Down
Midgut168 ± 64 of 4 1.10None
Tubule142 ± 164 of 4 1.00None
Hindgut82 ± 14 of 4 0.60Down
Heart270 ± 204 of 4 1.81Up
Fat body225 ± 294 of 4 1.50Up
Ovary255 ± 54 of 4 1.70Up
Testis90 ± 34 of 4 0.60Down
Male accessory glands123 ± 74 of 4 0.80None
Virgin spermatheca206 ± 124 of 4 1.38Up
Mated spermatheca177 ± 24 of 4 1.18None
Adult carcass109 ± 24 of 4 0.70Down
Larval CNS103 ± 44 of 4 0.69Down
Larval Salivary gland660 ± 134 of 4 4.41Up
Larval midgut229 ± 44 of 4 1.53Up
Larval tubule193 ± 114 of 4 1.30Up
Larval hindgut133 ± 74 of 4 0.89None
Larval fat body311 ± 154 of 4 2.10Up
Larval trachea112 ± 134 of 4 0.75Down
Larval carcass213 ± 324 of 4 1.42None
S2 cells (growing)208 ± 64 of 4 1.39Up
Whole fly149 ± 104 of 4

Looking for FBgn0011672. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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