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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011676 through 18771 annotations produced 1 hits



nitric oixide synthase (Nos):

Annotation Number : CG6713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011676
Gbrowse : chr2L:10804268-10837510 (-) // 100.0 //
Probeset : 1625574_at
Accessions : protein= NP_001027238; /// NP_001027239; /// NP_001027240; /// NP_001027241; /// NP_001027242; /// NP_001027243; /// NP_001027244; /// NP_001027245; /// NP_001027246; /// NP_523541;, nucleotide= NM_001032067; /// NM_001032068; /// NM_001032069; /// NM_001032070; /// NM_001032071; /// NM_001032072; /// NM_001032073; /// NM_001032074; /// NM_001032075; /// NM_078817;
Interpro : 0004517 // nitric-oxide synthase activity // inferred from direct assay /// 0004517 // nitric-oxide synthase activity //
FlyMine data for FBgn0011676.
BDGP gene expression has embryonic in situ data for Nos: 9 pix of staining in 6 body parts.
Homophila reports that CG6713 is a close match (2e-39) to human gene MTRR (NP_076915), a gene associated with Homocystinuria-megaloblastic anemia, cbl E type, 236270 (3);{Neural tube defects, folate-sensitive, susceptibility to}, 601634 (3).
TRiP has 1 RNAi stocks for FBgn0011676 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain377 154 of 443.90Up
Head57 24 of 4 6.70Up
Eye9 21 of 4 1.05None
Thoracicoabdominal ganglion154 54 of 418.00Up
Salivary gland9 40 of 4 1.08None
Crop2 00 of 4 0.30Down
Midgut3 10 of 4 0.40Down
Tubule3 00 of 4 0.40Down
Hindgut6 10 of 4 0.80None
Heart3 10 of 4 0.42Down
Fat body6 20 of 4 0.69None
Ovary4 10 of 4 0.50None
Testis30 44 of 4 3.50Up
Male accessory glands4 10 of 4 0.60Down
Virgin spermatheca3 10 of 4 0.35Down
Mated spermatheca2 10 of 4 0.34Down
Adult carcass2 00 of 4 0.20Down
Larval CNS50 54 of 4 5.88Up
Larval Salivary gland3 10 of 4 0.41Down
Larval midgut1 00 of 4 0.20Down
Larval tubule3 10 of 4 0.30Down
Larval hindgut1 00 of 4 0.19Down
Larval fat body3 20 of 4 0.40None
Larval trachea1 00 of 4 0.18Down
Larval carcass3 10 of 4 0.35Down
S2 cells (growing)11 12 of 4 1.34None
Whole fly8 00 of 4

Looking for FBgn0011676. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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