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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011692 through 18771 annotations produced 1 hits



Pavarotti KLP (pav):

Annotation Number : CG1258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011692
Gbrowse : chr3L:4242735-4246236 (+) // 100.0 //
Probeset : 1623405_at
Accessions : protein= NP_477025;, nucleotide= NM_057677;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0000916 // contractile ring contraction invo
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005813 // centrosome // non-traceable author statement /// 0005819
FlyMine data for FBgn0011692.
BDGP gene expression has embryonic in situ data for pav: 24 pix of staining in 15 body parts.
Homophila reports that CG1258 is a close match (6e-22) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
BioGrid reports that CG1258 interacts with CG31368 .
TRiP has 2 RNAi stocks for FBgn0011692 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye5 11 of 4 0.05Down
Thoracicoabdominal ganglion3 20 of 4 0.00Down
Salivary gland15 31 of 4 0.14Down
Crop3 10 of 4 0.00Down
Midgut8 20 of 4 0.10Down
Tubule4 10 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart4 01 of 4 0.04Down
Fat body7 33 of 4 0.07Down
Ovary353 74 of 4 3.20Up
Testis23 14 of 4 0.20Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca5 21 of 4 0.05Down
Mated spermatheca8 22 of 4 0.07Down
Adult carcass4 10 of 4 0.00Down
Larval CNS302 124 of 4 2.73Up
Larval Salivary gland15 23 of 4 0.14Down
Larval midgut14 22 of 4 0.13Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut21 14 of 4 0.19Down
Larval fat body33 74 of 4 0.30Down
Larval trachea65 84 of 4 0.59Down
Larval carcass45 44 of 4 0.41Down
S2 cells (growing)495 124 of 4 4.46Up
Whole fly111 34 of 4

Looking for FBgn0011692. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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