FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011693 through 18771 annotations produced 2 hits

/// pigment cell dehydrogenase reductase (CG15024 /// Pdh):

Annotation Number : CG15024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040699
Gbrowse : chr3L:4463047-4463338 (-) // 100.0 //
Probeset : 1626660_at
Accessions : protein= NP_001137959; /// NP_001137960; /// NP_524105; /// NP_652336; /// NP_730153;, nucleotide= NM_001144487; /// NM_001144488; /// NM_079381; /// NM_144079; /// NM_168659;
Pathway : engulfment // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation //
FlyMine data for FBgn0040699.
VDRC has 3 RNAi stocks for FBgn0040699 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	0.40	None
Head	7 ± 1	1 of 4	0.80	None
Eye	7 ± 1	0 of 4	0.80	None
Thoracicoabdominal ganglion	11 ± 2	2 of 4	1.10	None
Salivary gland	19 ± 3	1 of 4	1.96	None
Crop	4 ± 1	1 of 4	0.50	Down
Midgut	3 ± 0	0 of 4	0.30	Down
Tubule	9 ± 0	1 of 4	0.90	None
Hindgut	10 ± 1	0 of 4	1.00	None
Heart	5 ± 2	0 of 4	0.54	None
Fat body	11 ± 3	2 of 4	1.15	None
Ovary	5 ± 1	0 of 4	0.60	Down
Testis	9 ± 1	0 of 4	0.90	None
Male accessory glands	12 ± 3	0 of 4	1.30	None
Virgin spermatheca	10 ± 2	2 of 4	1.09	None
Mated spermatheca	13 ± 0	3 of 4	1.30	Up
Adult carcass	15 ± 9	1 of 4	1.60	None
Larval CNS	4 ± 2	1 of 4	0.40	Down
Larval Salivary gland	9 ± 3	1 of 4	0.99	None
Larval midgut	9 ± 1	1 of 4	0.98	None
Larval tubule	14 ± 1	1 of 4	1.50	Up
Larval hindgut	5 ± 1	1 of 4	0.52	Down
Larval fat body	10 ± 2	1 of 4	1.00	None
Larval trachea	3 ± 4	0 of 4	0.39	None
Larval carcass	7 ± 0	1 of 4	0.78	None
S2 cells (growing)	8 ± 1	2 of 4	0.83	None
Whole fly	9 ± 0	2 of 4

March 2006 (FlyBase/BDGP 5.3) (chr3L:16346326-16347397 (-) // 100.0 //):

Annotation Number : CG4899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1639269_a_at
Accessions : protein= EC:1.1.1.1, nucleotide=
Interpro : "0006911 // phagocytosis
Homophila reports that CG4899 is a close match (2e-11) to human gene ERAB;HADH2;HSD17B10;MRX17;MRX31;MRXS10 (NP_004484), a gene associated with 2-methyl-3-hydroxybutyryl-CoA dehydrogenase deficiency, 300438 (3);Mental retardation, X-linked 17/31, microduplication, 300705 (3);Mental retardation, X-linked syndromic 10, 300220 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	174 ± 12	4 of 4	0.50	Down
Head	4755 ± 259	4 of 4	13.50	Up
Eye	10169 ± 179	4 of 4	28.91	Up
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.00	Down
Salivary gland	11 ± 3	0 of 4	0.03	Down
Crop	4 ± 1	0 of 4	0.00	Down
Midgut	8 ± 1	0 of 4	0.00	Down
Tubule	12 ± 2	2 of 4	0.00	Down
Hindgut	15 ± 1	3 of 4	0.00	Down
Heart	40 ± 19	3 of 4	0.11	Down
Fat body	14 ± 5	1 of 4	0.04	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	36 ± 7	4 of 4	0.10	Down
Male accessory glands	3 ± 1	0 of 4	0.00	Down
Virgin spermatheca	15 ± 2	2 of 4	0.04	Down
Mated spermatheca	15 ± 2	3 of 4	0.04	Down
Adult carcass	28 ± 3	4 of 4	0.10	Down
Larval CNS	2 ± 2	1 of 4	0.01	Down
Larval Salivary gland	2 ± 1	0 of 4	0.01	Down
Larval midgut	8 ± 2	0 of 4	0.02	Down
Larval tubule	35 ± 1	4 of 4	0.10	Down
Larval hindgut	5 ± 1	0 of 4	0.02	Down
Larval fat body	6 ± 1	0 of 4	0.00	Down
Larval trachea	785 ± 1528	3 of 4	2.23	None
Larval carcass	6 ± 0	0 of 4	0.02	Down
S2 cells (growing)	3 ± 0	0 of 4	0.01	Down
Whole fly	351 ± 47	4 of 4

Looking for FBgn0011693. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720