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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011703 through 18771 annotations produced 1 hits



ribonucleoside-diphosphate reductase large subunit (RnrL):

Annotation Number : CG5371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011703
Gbrowse : chr2L:10325023-10327986 (-) // 100.0 //
Probeset : 1631007_at
Accessions : protein= NP_477027;, nucleotide= NM_057679;
Pathway : 0005971 // ribonucleoside-diphosphate reductase complex // inferred from sequence or structural similarity /// 0005971 /
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004748 // ribonucleoside-diphosphate reductase
FlyMine data for FBgn0011703.
BDGP gene expression has embryonic in situ data for RnrL: 15 pix of staining in 17 body parts.
TRiP has 1 RNAi stocks for FBgn0011703 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 04 of 4 0.00Down
Head22 ± 44 of 4 0.00Down
Eye11 ± 14 of 4 0.02Down
Thoracicoabdominal ganglion11 ± 03 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.02Down
Crop28 ± 24 of 4 0.00Down
Midgut45 ± 04 of 4 0.10Down
Tubule52 ± 174 of 4 0.10Down
Hindgut24 ± 04 of 4 0.00Down
Heart22 ± 04 of 4 0.04Down
Fat body38 ± 173 of 4 0.06Down
Ovary1240 ± 204 of 4 2.00Up
Testis23 ± 14 of 4 0.00Down
Male accessory glands18 ± 20 of 4 0.00Down
Virgin spermatheca25 ± 24 of 4 0.04Down
Mated spermatheca27 ± 14 of 4 0.04Down
Adult carcass36 ± 94 of 4 0.10Down
Larval CNS611 ± 234 of 4 1.00None
Larval Salivary gland465 ± 254 of 4 0.76Down
Larval midgut77 ± 74 of 4 0.13Down
Larval tubule63 ± 54 of 4 0.10Down
Larval hindgut183 ± 94 of 4 0.30Down
Larval fat body30 ± 64 of 4 0.10Down
Larval trachea341 ± 644 of 4 0.56Down
Larval carcass225 ± 154 of 4 0.37Down
S2 cells (growing)750 ± 184 of 4 1.23None
Whole fly611 ± 464 of 4

Looking for FBgn0011703. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime