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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011705 through 18771 annotations produced 1 hits



rolling stone (rost):

Annotation Number : CG9552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011705
Gbrowse : chr2L:8985931-8989287 (-) // 100.0 //
Probeset : 1635531_at
Accessions : protein= NP_723435;, nucleotide= NM_164842;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from direct assay /// 0
FlyMine data for FBgn0011705.
VDRC has 3 RNAi stocks for FBgn0011705 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 0.20Down
Head458 ± 334 of 4 1.60Up
Eye195 ± 334 of 4 0.69None
Thoracicoabdominal ganglion43 ± 64 of 4 0.20Down
Salivary gland636 ± 124 of 4 2.26Up
Crop52 ± 54 of 4 0.20Down
Midgut395 ± 74 of 4 1.40Up
Tubule513 ± 204 of 4 1.80Up
Hindgut108 ± 04 of 4 0.40Down
Heart299 ± 104 of 4 1.06None
Fat body77 ± 224 of 4 0.27Down
Ovary393 ± 114 of 4 1.40Up
Testis82 ± 34 of 4 0.30Down
Male accessory glands50 ± 64 of 4 0.20Down
Virgin spermatheca538 ± 544 of 4 1.91Up
Mated spermatheca163 ± 154 of 4 0.58Down
Adult carcass227 ± 144 of 4 0.80Down
Larval CNS315 ± 644 of 4 1.12None
Larval Salivary gland73 ± 24 of 4 0.26Down
Larval midgut115 ± 94 of 4 0.41Down
Larval tubule222 ± 174 of 4 0.80Down
Larval hindgut106 ± 34 of 4 0.38Down
Larval fat body147 ± 214 of 4 0.50Down
Larval trachea114 ± 214 of 4 0.41Down
Larval carcass101 ± 144 of 4 0.36Down
S2 cells (growing)592 ± 324 of 4 2.10Up
Whole fly282 ± 94 of 4

Looking for FBgn0011705. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime