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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011706 through 18771 annotations produced 1 hits



reaper (rpr):

Annotation Number : CG4319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011706
Gbrowse : chr3L:18390652-18391503 (-) // 100.0 //
Probeset : 1624859_at
Accessions : protein= NP_524138;, nucleotide= NM_079414;
Pathway : 0005737 // cytoplasm // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 000574
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from di
FlyMine data for FBgn0011706.
BioGrid reports that CG4319 interacts with CG2189 CG4097 CG2845 CG9375 CG9375 CG9375 CG9375 CG12559 CG4385 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG5123 CG5123 CG15793 CG5370 CG5370 CG5370 CG5370 CG5370 CG5370 CG7425 CG6829 CG6829 CG6829 CG6829 CG6303 CG6303 CG6303 CG6303 CG8238 CG7486 CG8293 CG8293 CG7788 CG7788 CG7788 CG7788 CG8167 CG8091 CG8091 CG8091 CG8091 CG8091 CG18803 CG14637 CG4345 CG8817 CG15437 CG15437 CG7892 CG13701 CG13701 Dmel CR33559 Dmel CR33010 Dmel CR33010 CG12284 .
VDRC has 2 RNAi stocks for FBgn0011706 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 4 4.20Up
Head12 13 of 4 1.20None
Eye4 11 of 4 0.46None
Thoracicoabdominal ganglion25 24 of 4 2.40Up
Salivary gland3 10 of 4 0.37None
Crop5 22 of 4 0.50None
Midgut8 12 of 4 0.80None
Tubule4 00 of 4 0.40Down
Hindgut8 14 of 4 0.80None
Heart5 11 of 4 0.54None
Fat body8 22 of 4 0.78None
Ovary3 01 of 4 0.30None
Testis14 14 of 4 1.40None
Male accessory glands9 01 of 4 0.90None
Virgin spermatheca8 13 of 4 0.76None
Mated spermatheca10 14 of 4 1.00None
Adult carcass10 13 of 4 1.00None
Larval CNS107 54 of 410.22Up
Larval Salivary gland15 23 of 4 1.49None
Larval midgut5 01 of 4 0.50None
Larval tubule3 00 of 4 0.40None
Larval hindgut132 104 of 412.55Up
Larval fat body7 21 of 4 0.70None
Larval trachea20 24 of 4 1.94Up
Larval carcass41 124 of 4 3.96None
S2 cells (growing)125 164 of 411.95Up
Whole fly10 23 of 4

Looking for FBgn0011706. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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