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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011737 through 18771 annotations produced 1 hits



wee (wee):

Annotation Number : CG4488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011737
Gbrowse : chr2L:6911342-6914137 (-) // 99.79 //
Probeset : 1633731_at
Accessions : protein= NP_477035;, nucleotide= NM_057687;
Pathway : embryonic // inferred from mutant phenotype /// 0045736 // negative regulation of cyclin-dependent protein kinase activ
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
FlyMine data for FBgn0011737.
BDGP gene expression has embryonic in situ data for wee: 14 pix of staining in 5 body parts.
BioGrid reports that CG4488 interacts with CG8995 CG5383 CG5680 CG6378 CG8614 CG9014 CG4336 CG5363 CG4252 CG4252 CG4252 CG4252 CG33336 CG5408 CG3018 .
TRiP has 1 RNAi stocks for FBgn0011737 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain548 ± 164 of 4 3.00Up
Head166 ± 104 of 4 0.90None
Eye79 ± 24 of 4 0.44Down
Thoracicoabdominal ganglion487 ± 144 of 4 2.70Up
Salivary gland60 ± 74 of 4 0.33Down
Crop69 ± 44 of 4 0.40Down
Midgut35 ± 14 of 4 0.20Down
Tubule43 ± 24 of 4 0.20Down
Hindgut51 ± 14 of 4 0.30Down
Heart40 ± 34 of 4 0.22Down
Fat body53 ± 54 of 4 0.30Down
Ovary450 ± 104 of 4 2.50Up
Testis659 ± 54 of 4 3.60Up
Male accessory glands84 ± 34 of 4 0.50Down
Virgin spermatheca66 ± 44 of 4 0.37Down
Mated spermatheca66 ± 24 of 4 0.36Down
Adult carcass42 ± 44 of 4 0.20Down
Larval CNS312 ± 124 of 4 1.72Up
Larval Salivary gland130 ± 74 of 4 0.72Down
Larval midgut41 ± 34 of 4 0.23Down
Larval tubule49 ± 24 of 4 0.30Down
Larval hindgut69 ± 24 of 4 0.38Down
Larval fat body179 ± 544 of 4 1.00None
Larval trachea71 ± 84 of 4 0.39Down
Larval carcass63 ± 14 of 4 0.35Down
S2 cells (growing)218 ± 64 of 4 1.20None
Whole fly181 ± 144 of 4

Looking for FBgn0011737. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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