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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011746 through 18771 annotations produced 1 hits



medullaless (ana):

Annotation Number : CG8084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011746
Gbrowse : chr2R:4956605-4965059 (+) // 100.0 //
Probeset : 1630502_at
Accessions : protein= NP_001163093; /// NP_477038;, nucleotide= NM_001169622; /// NM_057690;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0008083 // growth factor activity // inferred from electronic annotation
FlyMine data for FBgn0011746.
TRiP has 1 RNAi stocks for FBgn0011746 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain437 144 of 4 4.30Up
Head190 94 of 4 1.90Up
Eye31 104 of 4 0.31Down
Thoracicoabdominal ganglion565 124 of 4 5.60Up
Salivary gland17 43 of 4 0.17Down
Crop13 04 of 4 0.10Down
Midgut16 14 of 4 0.20Down
Tubule3 10 of 4 0.00Down
Hindgut8 14 of 4 0.10Down
Heart34 74 of 4 0.34Down
Fat body24 94 of 4 0.24Down
Ovary70 64 of 4 0.70Down
Testis635 194 of 4 6.30Up
Male accessory glands11 22 of 4 0.10Down
Virgin spermatheca11 14 of 4 0.11Down
Mated spermatheca10 23 of 4 0.10Down
Adult carcass22 33 of 4 0.20Down
Larval CNS195 574 of 4 1.92Up
Larval Salivary gland5 11 of 4 0.05Down
Larval midgut53 94 of 4 0.52Down
Larval tubule6 11 of 4 0.10Down
Larval hindgut17 14 of 4 0.18Down
Larval fat body5 21 of 4 0.10Down
Larval trachea7 23 of 4 0.07Down
Larval carcass25 14 of 4 0.25Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly101 64 of 4

Looking for FBgn0011746. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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