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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011747 through 18771 annotations produced 1 hits



ankyrin (Ank):

Annotation Number : CG1651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011747
Gbrowse : chr4:137014-150378 (-) // 100.0 //
Probeset : 1635711_s_at
Accessions : protein= NP_001162819; /// NP_001162820; /// NP_787121; /// NP_787122; /// NP_787123; /// NP_787124;, nucleotide= NM_001169348; /// NM_001169349; /// NM_175925; /// NM_175926; /// NM_175927; /// NM_175928;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0045169 // fusome // inferred from direct assay /// 0045169
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity /// 0005515 // prot
FlyMine data for FBgn0011747.
Homophila reports that CG1651 is a close match (8e-11) to human gene KIAA1650;PROSAP2;PSAP2;SHANK3 (NP_001073889), a gene associated with Autism, chromosome 22q13.3 deletion syndrome-related (3);Chromosome 22q13.3 deletion syndrome, 606232 (3).
TRiP has 1 RNAi stocks for FBgn0011747 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain926 ± 224 of 4 2.20Up
Head582 ± 364 of 4 1.40Up
Eye641 ± 614 of 4 1.55Up
Thoracicoabdominal ganglion869 ± 84 of 4 2.10Up
Salivary gland451 ± 234 of 4 1.09None
Crop730 ± 384 of 4 1.80Up
Midgut330 ± 64 of 4 0.80None
Tubule575 ± 344 of 4 1.40Up
Hindgut513 ± 184 of 4 1.20None
Heart412 ± 194 of 4 0.99None
Fat body429 ± 174 of 4 1.04None
Ovary687 ± 44 of 4 1.70Up
Testis190 ± 94 of 4 0.50Down
Male accessory glands587 ± 134 of 4 1.40Up
Virgin spermatheca775 ± 464 of 4 1.87Up
Mated spermatheca735 ± 284 of 4 1.77Up
Adult carcass391 ± 64 of 4 0.90None
Larval CNS714 ± 294 of 4 1.72Up
Larval Salivary gland547 ± 224 of 4 1.32Up
Larval midgut466 ± 234 of 4 1.12None
Larval tubule504 ± 114 of 4 1.20None
Larval hindgut688 ± 64 of 4 1.66Up
Larval fat body684 ± 444 of 4 1.70Up
Larval trachea720 ± 984 of 4 1.74Up
Larval carcass678 ± 374 of 4 1.64Up
S2 cells (growing)535 ± 154 of 4 1.29None
Whole fly414 ± 414 of 4

Looking for FBgn0011747. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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