FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011754 through 18771 annotations produced 3 hits

chrX:11589163-11597778 (+) // 100.0 // (phosphorylase kinase gamma):

Annotation Number : CG1830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632955_at
Accessions : protein= , nucleotide= NP_511129; /// NP_727548; /// NP_727549;
Pathway : 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006007 // glucose catabolic process
Interpro : 0005964 // phosphorylase kinase complex // inferred from electronic annotation /// 0005964 // phosphorylase kinase compl
FlyMine data for full length.
Homophila reports that CG1830 is a close match (4e-11) to human gene FGFR4 (NP_998812), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG1830 interacts with CG8364 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 1	4 of 4	0.40	Down
Head	76 ± 5	4 of 4	0.60	Down
Eye	64 ± 6	4 of 4	0.53	Down
Thoracicoabdominal ganglion	60 ± 3	4 of 4	0.50	Down
Salivary gland	51 ± 7	3 of 4	0.43	Down
Crop	78 ± 3	4 of 4	0.70	Down
Midgut	43 ± 3	4 of 4	0.40	Down
Tubule	2199 ± 137	4 of 4	18.30	Up
Hindgut	109 ± 4	4 of 4	0.90	None
Heart	309 ± 21	4 of 4	2.58	Up
Fat body	218 ± 24	4 of 4	1.81	Up
Ovary	162 ± 3	4 of 4	1.40	Up
Testis	7 ± 0	1 of 4	0.10	Down
Male accessory glands	11 ± 2	0 of 4	0.10	Down
Virgin spermatheca	222 ± 14	4 of 4	1.85	Up
Mated spermatheca	152 ± 16	4 of 4	1.26	None
Adult carcass	190 ± 17	4 of 4	1.60	Up
Larval CNS	34 ± 4	4 of 4	0.29	Down
Larval Salivary gland	12 ± 1	0 of 4	0.10	Down
Larval midgut	26 ± 2	4 of 4	0.22	Down
Larval tubule	125 ± 4	4 of 4	1.00	None
Larval hindgut	42 ± 2	4 of 4	0.35	Down
Larval fat body	71 ± 6	4 of 4	0.60	Down
Larval trachea	68 ± 4	4 of 4	0.57	Down
Larval carcass	161 ± 21	4 of 4	1.34	None
S2 cells (growing)	13 ± 1	0 of 4	0.11	Down
Whole fly	120 ± 5	4 of 4

chrX:11589185-11597790 (+) // 99.84 // (phosphorylase kinase gamma):

Annotation Number : CG1830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623842_a_at
Accessions : protein= , nucleotide= NP_511129; /// NP_727548; /// NP_727549;
Pathway : 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006007 // glucose catabolic process
Interpro : 0005964 // phosphorylase kinase complex // inferred from electronic annotation /// 0005964 // phosphorylase kinase compl
FlyMine data for full length.
Homophila reports that CG1830 is a close match (4e-11) to human gene FGFR4 (NP_998812), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG1830 interacts with CG8364 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	458 ± 34	4 of 4	2.00	Up
Head	296 ± 17	4 of 4	1.30	Up
Eye	308 ± 4	4 of 4	1.32	Up
Thoracicoabdominal ganglion	482 ± 17	4 of 4	2.10	Up
Salivary gland	229 ± 29	4 of 4	0.98	None
Crop	266 ± 4	4 of 4	1.10	None
Midgut	114 ± 3	4 of 4	0.50	Down
Tubule	3176 ± 131	4 of 4	13.60	Up
Hindgut	298 ± 10	4 of 4	1.30	Up
Heart	450 ± 31	4 of 4	1.93	Up
Fat body	447 ± 18	4 of 4	1.91	Up
Ovary	269 ± 5	4 of 4	1.10	None
Testis	143 ± 12	4 of 4	0.60	Down
Male accessory glands	100 ± 8	4 of 4	0.40	Down
Virgin spermatheca	644 ± 16	4 of 4	2.75	Up
Mated spermatheca	508 ± 29	4 of 4	2.17	Up
Adult carcass	554 ± 34	4 of 4	2.40	Up
Larval CNS	216 ± 16	4 of 4	0.92	None
Larval Salivary gland	112 ± 3	4 of 4	0.48	Down
Larval midgut	96 ± 11	4 of 4	0.41	Down
Larval tubule	260 ± 21	4 of 4	1.10	None
Larval hindgut	92 ± 2	4 of 4	0.40	Down
Larval fat body	153 ± 6	4 of 4	0.70	Down
Larval trachea	220 ± 17	4 of 4	0.94	None
Larval carcass	382 ± 41	4 of 4	1.63	Up
S2 cells (growing)	149 ± 2	4 of 4	0.64	Down
Whole fly	234 ± 15	4 of 4

chrX:11589166-11598444 (+) // 100.0 // (phosphorylase kinase gamma):

Annotation Number : CG1830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624139_at
Accessions : protein= , nucleotide= NP_511129; /// NP_727548; /// NP_727549;
Pathway : 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006007 // glucose catabolic process
Interpro : 0005964 // phosphorylase kinase complex // inferred from electronic annotation /// 0005964 // phosphorylase kinase compl
FlyMine data for full length.
Homophila reports that CG1830 is a close match (4e-11) to human gene FGFR4 (NP_998812), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG1830 interacts with CG8364 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	463 ± 12	4 of 4	1.60	Up
Head	320 ± 15	4 of 4	1.10	None
Eye	240 ± 8	4 of 4	0.82	Down
Thoracicoabdominal ganglion	462 ± 16	4 of 4	1.60	Up
Salivary gland	382 ± 15	4 of 4	1.31	Up
Crop	288 ± 4	4 of 4	1.00	None
Midgut	124 ± 6	4 of 4	0.40	Down
Tubule	1801 ± 85	4 of 4	6.20	Up
Hindgut	328 ± 8	4 of 4	1.10	Up
Heart	346 ± 13	4 of 4	1.18	Up
Fat body	510 ± 33	4 of 4	1.74	Up
Ovary	431 ± 9	4 of 4	1.50	Up
Testis	172 ± 8	4 of 4	0.60	Down
Male accessory glands	136 ± 12	4 of 4	0.50	Down
Virgin spermatheca	392 ± 10	4 of 4	1.34	Up
Mated spermatheca	278 ± 20	4 of 4	0.95	None
Adult carcass	497 ± 15	4 of 4	1.70	Up
Larval CNS	350 ± 48	4 of 4	1.20	None
Larval Salivary gland	151 ± 8	4 of 4	0.52	Down
Larval midgut	96 ± 6	4 of 4	0.33	Down
Larval tubule	236 ± 3	4 of 4	0.80	Down
Larval hindgut	128 ± 3	4 of 4	0.44	Down
Larval fat body	173 ± 9	4 of 4	0.60	Down
Larval trachea	168 ± 9	4 of 4	0.58	Down
Larval carcass	462 ± 38	4 of 4	1.58	Up
S2 cells (growing)	199 ± 11	4 of 4	0.68	Down
Whole fly	292 ± 8	4 of 4

Looking for FBgn0011754. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720