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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011762 through 18771 annotations produced 1 hits



DNA polymerase 50K (DNApol-alpha50):

Annotation Number : CG7108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011762
Gbrowse : chr3L:8333419-8337505 (+) // 100.0 //
Probeset : 1633854_at
Accessions : protein= NP_523972;, nucleotide= NM_079248;
Pathway : synthesis of RNA primer // inferred from electronic annotation /// 0006269 // DNA replication
Interpro : synthesis of RNA primer // inferred from sequence or structural similarity /// 0006350 // transcription // inferred fro
FlyMine data for FBgn0011762.
BioGrid reports that CG7108 interacts with CG7386 CG9986 .
VDRC has 1 RNAi stocks for FBgn0011762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 03 of 4 0.20Down
Head16 14 of 4 0.20Down
Eye15 10 of 4 0.17Down
Thoracicoabdominal ganglion18 14 of 4 0.20Down
Salivary gland17 30 of 4 0.19Down
Crop17 12 of 4 0.20Down
Midgut16 10 of 4 0.20Down
Tubule18 22 of 4 0.20Down
Hindgut24 34 of 4 0.30Down
Heart7 20 of 4 0.08Down
Fat body14 30 of 4 0.16Down
Ovary227 24 of 4 2.50Up
Testis4 10 of 4 0.00Down
Male accessory glands9 10 of 4 0.10Down
Virgin spermatheca20 14 of 4 0.22Down
Mated spermatheca17 13 of 4 0.19Down
Adult carcass22 33 of 4 0.20Down
Larval CNS81 24 of 4 0.88Down
Larval Salivary gland65 44 of 4 0.71Down
Larval midgut13 11 of 4 0.15Down
Larval tubule28 04 of 4 0.30Down
Larval hindgut35 34 of 4 0.38Down
Larval fat body26 24 of 4 0.30Down
Larval trachea60 104 of 4 0.65Down
Larval carcass31 14 of 4 0.34Down
S2 cells (growing)44 14 of 4 0.48Down
Whole fly92 34 of 4

Looking for FBgn0011762. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime