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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011764 through 18771 annotations produced 1 hits



Dorsal switch protein 1 (Dsp1):

Annotation Number : CG12223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011764
Gbrowse : chrX:16227644-16232926 (+) // 100.0 //
Probeset : 1624766_s_at
Accessions : protein= NP_001138203; /// NP_542446; /// NP_727959; /// NP_727960; /// NP_727961; /// NP_996485;, nucleotide= NM_001144731; /// NM_080715; /// NM_167502; /// NM_167503; /// NM_167504; /// NM_206762;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus //
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /
FlyMine data for FBgn0011764.
BDGP gene expression has embryonic in situ data for Dsp1: 4 pix of staining in 1 body parts.
BioGrid reports that CG12223 interacts with CG30122 CG5846 CG6459 CG9423 CG1028 CG32443 CG32443 CG3978 CG1030 CG1030 CG8651 CG10388 CG8887 .
TRiP has 1 RNAi stocks for FBgn0011764 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011764 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain409 ± 94 of 4 1.40Up
Head219 ± 124 of 4 0.80Down
Eye249 ± 234 of 4 0.87None
Thoracicoabdominal ganglion261 ± 64 of 4 0.90None
Salivary gland211 ± 24 of 4 0.73Down
Crop381 ± 144 of 4 1.30Up
Midgut140 ± 24 of 4 0.50Down
Tubule88 ± 64 of 4 0.30Down
Hindgut242 ± 104 of 4 0.80Down
Heart172 ± 114 of 4 0.60Down
Fat body190 ± 294 of 4 0.66Down
Ovary616 ± 114 of 4 2.10Up
Testis62 ± 14 of 4 0.20Down
Male accessory glands380 ± 354 of 4 1.30None
Virgin spermatheca136 ± 84 of 4 0.47Down
Mated spermatheca196 ± 84 of 4 0.68Down
Adult carcass181 ± 54 of 4 0.60Down
Larval CNS942 ± 914 of 4 3.27Up
Larval Salivary gland248 ± 84 of 4 0.86Down
Larval midgut160 ± 94 of 4 0.56Down
Larval tubule191 ± 64 of 4 0.70Down
Larval hindgut325 ± 134 of 4 1.13None
Larval fat body136 ± 94 of 4 0.50Down
Larval trachea498 ± 164 of 4 1.73Up
Larval carcass331 ± 74 of 4 1.15Up
S2 cells (growing)811 ± 74 of 4 2.81Up
Whole fly288 ± 114 of 4

Looking for FBgn0011764. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime