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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011766 through 18771 annotations produced 1 hits

E2F transcription factor /// torp4a (E2f /// torp4a):

Annotation Number : CG6376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011766
Gbrowse : chr3R:17446025-17486127 (-) // 100.0 //
Probeset : 1625387_s_at
Accessions : protein= NP_524437; /// NP_572178; /// NP_732646; /// NP_732647;, nucleotide= NM_079713; /// NM_131950; /// NM_169961; /// NM_169962;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006457 // protein folding // inferred from sequence or struct
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0011766.
BDGP gene expression has embryonic in situ data for E2f: 61 pix of staining in 20 body parts.
BioGrid reports that CG6376 interacts with CG5942 CG5940 CG7981 CG9075 CG3821 CG18740 CG7467 CG17077 CG9375 CG12559 CG10079 CG5363 CG1772 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3612 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG4654 CG5940 CG3938 CG3938 CG1071 CG1071 CG1071 CG1071 CG1071 CG1071 CG7413 CG7413 CG7413 CG7413 CG4207 CG5363 CG1772 CG4063 CG18497 .
TRiP has 3 RNAi stocks for FBgn0011766 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011766 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 144 of 4 2.40Up
Head207 114 of 4 1.50Up
Eye282 84 of 4 2.00Up
Thoracicoabdominal ganglion487 54 of 4 3.40Up
Salivary gland351 164 of 4 2.48Up
Crop408 114 of 4 2.90Up
Midgut223 84 of 4 1.60Up
Tubule218 74 of 4 1.50Up
Hindgut326 74 of 4 2.30Up
Heart277 84 of 4 1.96Up
Fat body246 144 of 4 1.74Up
Ovary156 54 of 4 1.10None
Testis35 04 of 4 0.20Down
Male accessory glands470 34 of 4 3.30Up
Virgin spermatheca673 894 of 4 4.75Up
Mated spermatheca713 444 of 4 5.04Up
Adult carcass158 94 of 4 1.10None
Larval CNS1317 1614 of 4 9.29Up
Larval Salivary gland966 704 of 4 6.82Up
Larval midgut365 174 of 4 2.58Up
Larval tubule360 64 of 4 2.50Up
Larval hindgut619 204 of 4 4.37Up
Larval fat body183 134 of 4 1.30Up
Larval trachea782 364 of 4 5.52Up
Larval carcass597 374 of 4 4.21Up
S2 cells (growing)11 14 of 4 0.08Down
Whole fly141 74 of 4

Looking for FBgn0011766. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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