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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011768 through 18771 annotations produced 1 hits



glutathione-dependent formaldehyde dehydrogenase (Fdh):

Annotation Number : CG6598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011768
Gbrowse : chr3R:6696626-6698102 (-) // 100.0 //
Probeset : 1636740_at
Accessions : protein= NP_524310;, nucleotide= NM_079586;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity
FlyMine data for FBgn0011768.
BDGP gene expression has embryonic in situ data for Fdh: 17 pix of staining in 6 body parts.
Homophila reports that CG6598 is a close match (9e-107) to human gene ADH1C;ADH3 (NP_000660), a gene associated with {Parkinson disease, susceptibility to}, 168600 (3).
TRiP has 1 RNAi stocks for FBgn0011768 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 ± 14 of 4 0.30Down
Head619 ± 404 of 4 1.00None
Eye312 ± 164 of 4 0.48Down
Thoracicoabdominal ganglion157 ± 74 of 4 0.20Down
Salivary gland357 ± 144 of 4 0.55Down
Crop525 ± 134 of 4 0.80None
Midgut621 ± 174 of 4 1.00None
Tubule1098 ± 474 of 4 1.70Up
Hindgut1000 ± 134 of 4 1.50Up
Heart1018 ± 464 of 4 1.57Up
Fat body1378 ± 964 of 4 2.13Up
Ovary765 ± 164 of 4 1.20None
Testis254 ± 94 of 4 0.40Down
Male accessory glands753 ± 544 of 4 1.20None
Virgin spermatheca2211 ± 574 of 4 3.42Up
Mated spermatheca1882 ± 884 of 4 2.91Up
Adult carcass949 ± 354 of 4 1.50Up
Larval CNS623 ± 504 of 4 0.96None
Larval Salivary gland1016 ± 284 of 4 1.57Up
Larval midgut701 ± 444 of 4 1.09None
Larval tubule911 ± 204 of 4 1.40Up
Larval hindgut919 ± 104 of 4 1.42Up
Larval fat body866 ± 1014 of 4 1.30None
Larval trachea1222 ± 264 of 4 1.89Up
Larval carcass899 ± 54 of 4 1.39Up
S2 cells (growing)585 ± 214 of 4 0.91None
Whole fly646 ± 674 of 4

Looking for FBgn0011768. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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