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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011769 through 18771 annotations produced 1 hits



Ferredoxin (Fdxh):

Annotation Number : CG4205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011769
Gbrowse : chr3L:9363298-9364137 (-) // 100.0 //
Probeset : 1627945_at
Accessions : protein= NP_523993;, nucleotide= NM_079269;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from ele
Interpro : "0009055 // electron carrier activity // inferred from sequence or structural similarity /// 0009055 // electron carrier
FlyMine data for FBgn0011769.
VDRC has 4 RNAi stocks for FBgn0011769 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 74 of 4 1.90Up
Head100 34 of 4 1.00None
Eye83 34 of 4 0.87None
Thoracicoabdominal ganglion196 34 of 4 2.00Up
Salivary gland95 74 of 4 0.99None
Crop119 74 of 4 1.20Up
Midgut113 74 of 4 1.20None
Tubule136 94 of 4 1.40Up
Hindgut152 14 of 4 1.60Up
Heart75 24 of 4 0.78Down
Fat body108 144 of 4 1.13None
Ovary112 34 of 4 1.20None
Testis112 14 of 4 1.20None
Male accessory glands99 84 of 4 1.00None
Virgin spermatheca74 14 of 4 0.78Down
Mated spermatheca84 54 of 4 0.88None
Adult carcass100 64 of 4 1.00None
Larval CNS131 124 of 4 1.36Up
Larval Salivary gland136 54 of 4 1.42Up
Larval midgut78 34 of 4 0.82None
Larval tubule86 54 of 4 0.90None
Larval hindgut154 34 of 4 1.60Up
Larval fat body52 54 of 4 0.50Down
Larval trachea112 84 of 4 1.17None
Larval carcass99 114 of 4 1.03None
S2 cells (growing)149 84 of 4 1.56Up
Whole fly96 64 of 4

Looking for FBgn0011769. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime