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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011785 through 18771 annotations produced 1 hits



lethal (3) 05842 (BRWD3):

Annotation Number : CG31132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011785
Gbrowse : chr3R:20144740-20154348 (+) // 100.0 //
Probeset : 1640098_at
Accessions : protein= NP_732982;, nucleotide= NM_170139;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0011785.
Homophila reports that CG31132 is a close match (1e-11) to human gene CBP;CREBBP;RSTS (NP_004371), a gene associated with Rubenstein-Taybi syndrome, 180849 (3).
TRiP has 1 RNAi stocks for FBgn0011785 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 44 of 4 1.20Up
Head72 ± 54 of 4 0.50Down
Eye86 ± 94 of 4 0.60Down
Thoracicoabdominal ganglion124 ± 34 of 4 0.90Down
Salivary gland150 ± 184 of 4 1.03None
Crop111 ± 34 of 4 0.80Down
Midgut63 ± 24 of 4 0.40Down
Tubule52 ± 14 of 4 0.40Down
Hindgut91 ± 34 of 4 0.60Down
Heart77 ± 24 of 4 0.53Down
Fat body84 ± 114 of 4 0.58Down
Ovary431 ± 44 of 4 3.00Up
Testis44 ± 04 of 4 0.30Down
Male accessory glands162 ± 84 of 4 1.10None
Virgin spermatheca51 ± 34 of 4 0.35Down
Mated spermatheca62 ± 24 of 4 0.43Down
Adult carcass101 ± 54 of 4 0.70Down
Larval CNS370 ± 274 of 4 2.55Up
Larval Salivary gland158 ± 44 of 4 1.09None
Larval midgut71 ± 74 of 4 0.49Down
Larval tubule107 ± 24 of 4 0.70Down
Larval hindgut131 ± 74 of 4 0.90None
Larval fat body65 ± 14 of 4 0.40Down
Larval trachea113 ± 74 of 4 0.78Down
Larval carcass118 ± 34 of 4 0.81Down
S2 cells (growing)182 ± 34 of 4 1.25Up
Whole fly145 ± 44 of 4

Looking for FBgn0011785. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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