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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011787 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L12 (mRpL12):

Annotation Number : CG5012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011787
Gbrowse : chr3L:8949891-8950682 (+) // 100.0 //
Probeset : 1631718_at
Accessions : protein= NP_524742;, nucleotide= NM_080003;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003682 // chromatin binding // inferred from genetic interaction /// 0003735 // structural constituent of ribosome // i
FlyMine data for FBgn0011787.
BDGP gene expression has embryonic in situ data for mRpL7-L12: 11 pix of staining in 13 body parts.
VDRC has 4 RNAi stocks for FBgn0011787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain333 64 of 4 0.90None
Head187 104 of 4 0.50Down
Eye163 74 of 4 0.46Down
Thoracicoabdominal ganglion310 134 of 4 0.90None
Salivary gland219 44 of 4 0.61Down
Crop189 34 of 4 0.50Down
Midgut373 24 of 4 1.00None
Tubule217 54 of 4 0.60Down
Hindgut268 124 of 4 0.70Down
Heart211 24 of 4 0.59Down
Fat body233 414 of 4 0.65Down
Ovary660 124 of 4 1.80Up
Testis202 114 of 4 0.60Down
Male accessory glands188 74 of 4 0.50Down
Virgin spermatheca129 134 of 4 0.36Down
Mated spermatheca138 54 of 4 0.38Down
Adult carcass186 44 of 4 0.50Down
Larval CNS349 344 of 4 0.97None
Larval Salivary gland324 14 of 4 0.90None
Larval midgut233 234 of 4 0.65Down
Larval tubule79 44 of 4 0.20Down
Larval hindgut346 274 of 4 0.96None
Larval fat body91 64 of 4 0.30Down
Larval trachea317 384 of 4 0.88None
Larval carcass275 424 of 4 0.77None
S2 cells (growing)444 104 of 4 1.24Up
Whole fly359 254 of 4

Looking for FBgn0011787. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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