FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0011802 through 18771 annotations produced 1 hits

Gemin3 (Gem3):

Annotation Number : CG6539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011802
Gbrowse : chr3L:10452717-10456199 (-) // 100.0 //
Probeset : 1629281_at
Accessions : protein= NP_524019;, nucleotide= NM_079295;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0071254 /
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // inferred
FlyMine data for FBgn0011802.
BioGrid reports that CG6539 interacts with CG8556 .
TRiP has 1 RNAi stocks for FBgn0011802 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011802 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	38 ± 1	4 of 4	0.30	Down
Head	25 ± 3	4 of 4	0.20	Down
Eye	18 ± 2	4 of 4	0.15	Down
Thoracicoabdominal ganglion	35 ± 2	4 of 4	0.30	Down
Salivary gland	25 ± 1	3 of 4	0.21	Down
Crop	29 ± 2	4 of 4	0.20	Down
Midgut	20 ± 1	4 of 4	0.20	Down
Tubule	33 ± 5	4 of 4	0.30	Down
Hindgut	23 ± 2	4 of 4	0.20	Down
Heart	16 ± 1	4 of 4	0.14	Down
Fat body	16 ± 3	4 of 4	0.13	Down
Ovary	314 ± 7	4 of 4	2.60	Up
Testis	170 ± 10	4 of 4	1.40	Up
Male accessory glands	24 ± 2	4 of 4	0.20	Down
Virgin spermatheca	26 ± 3	4 of 4	0.22	Down
Mated spermatheca	31 ± 1	4 of 4	0.26	Down
Adult carcass	21 ± 0	3 of 4	0.20	Down
Larval CNS	94 ± 8	4 of 4	0.78	Down
Larval Salivary gland	36 ± 2	4 of 4	0.30	Down
Larval midgut	17 ± 1	4 of 4	0.14	Down
Larval tubule	27 ± 2	4 of 4	0.20	Down
Larval hindgut	26 ± 0	4 of 4	0.22	Down
Larval fat body	29 ± 5	4 of 4	0.20	Down
Larval trachea	44 ± 3	4 of 4	0.37	Down
Larval carcass	32 ± 4	4 of 4	0.27	Down
S2 cells (growing)	74 ± 1	4 of 4	0.61	Down
Whole fly	121 ± 8	4 of 4

Looking for FBgn0011802. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720