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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011817 through 18771 annotations produced 2 hits



nemo (nmo):

Annotation Number : CG7892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011817
Gbrowse : chr3L:7972148-8043450 (+) // 100.0 //
Probeset : 1624300_s_at
Accessions : protein= NP_523967; /// NP_729316; /// NP_729317; /// NP_729318; /// NP_729319; /// NP_729320;, nucleotide= NM_079243; /// NM_168248; /// NM_168249; /// NM_168250; /// NM_168251; /// NM_168252;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0011817.
BDGP gene expression has embryonic in situ data for nmo: 18 pix of staining in 7 body parts.
Homophila reports that CG7892 is a close match (7e-11) to human gene NTRK2;TRKB (NP_006171), a gene associated with Obesity, hyperphagia, and developmental delay (3).
BioGrid reports that CG7892 interacts with CG9511 CG5680 CG3619 CG3619 CG9885 CG5460 CG5460 CG2275 CG14548 CG11450 CG4444 CG17579 CG17579 CG5123 CG3936 CG3936 CG2248 CG16973 CG4319 CG18492 CG18492 CG18492 CG18492 CG17964 .
TRiP has 4 RNAi stocks for FBgn0011817 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011817 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain560 264 of 4 2.90Up
Head145 34 of 4 0.80Down
Eye86 34 of 4 0.45Down
Thoracicoabdominal ganglion523 284 of 4 2.70Up
Salivary gland136 124 of 4 0.71Down
Crop102 44 of 4 0.50Down
Midgut38 50 of 4 0.20Down
Tubule45 24 of 4 0.20Down
Hindgut67 24 of 4 0.40Down
Heart49 24 of 4 0.25Down
Fat body86 194 of 4 0.45Down
Ovary365 104 of 4 1.90Up
Testis683 254 of 4 3.50Up
Male accessory glands56 24 of 4 0.30Down
Virgin spermatheca86 64 of 4 0.45Down
Mated spermatheca76 74 of 4 0.40Down
Adult carcass60 14 of 4 0.30Down
Larval CNS710 274 of 4 3.68Up
Larval Salivary gland89 74 of 4 0.46Down
Larval midgut48 44 of 4 0.25Down
Larval tubule50 34 of 4 0.30Down
Larval hindgut92 94 of 4 0.48Down
Larval fat body205 474 of 4 1.10None
Larval trachea75 94 of 4 0.39Down
Larval carcass116 154 of 4 0.60Down
S2 cells (growing)109 24 of 4 0.57Down
Whole fly192 134 of 4



/// nemo (CG3841 /// nmo):

Annotation Number : CG3841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032131
Gbrowse : chr2L:9589665-9591547 (+) // 100.0 //
Probeset : 1632400_at
Accessions : protein= NP_609300;, nucleotide= NM_135456;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0032131.
Homophila reports that CG3841 is a close match (4e-27) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 3 RNAi stocks for FBgn0032131 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head5 10 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 10 of 4 0.06Down
Crop3 10 of 4 0.00Down
Midgut1030 184 of 415.40Up
Tubule5 00 of 4 0.10Down
Hindgut5 10 of 4 0.10Down
Heart3 00 of 4 0.05Down
Fat body5 20 of 4 0.09Down
Ovary1 00 of 4 0.00Down
Testis102 54 of 4 1.50Up
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.05Down
Mated spermatheca3 10 of 4 0.05Down
Adult carcass6 20 of 4 0.10Down
Larval CNS3 10 of 4 0.05Down
Larval Salivary gland6 20 of 4 0.09Down
Larval midgut280 194 of 4 4.18Up
Larval tubule2 10 of 4 0.00Down
Larval hindgut2 10 of 4 0.04Down
Larval fat body20 92 of 4 0.30Down
Larval trachea3 30 of 4 0.06Down
Larval carcass6 12 of 4 0.10Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly67 64 of 4

Looking for FBgn0011817. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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