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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011823 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:10056905-10060097 (+) // 100.0 //):

Annotation Number : CG4799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1637276_at
Accessions : protein= , nucleotide=
Interpro : "0000059 // protein import into nucleus
BioGrid reports that CG4799 interacts with CG5441 CG6944 CG8886 CG8900 CG9324 CG9771 CG8548 CG9423 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland12 ± 50 of 4 0.01Down
Crop10 ± 32 of 4 0.00Down
Midgut34 ± 24 of 4 0.00Down
Tubule27 ± 211 of 4 0.00Down
Hindgut6 ± 11 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body23 ± 213 of 4 0.01Down
Ovary2229 ± 364 of 4 1.20Up
Testis3240 ± 1534 of 4 1.80Up
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca13 ± 23 of 4 0.01Down
Mated spermatheca9 ± 51 of 4 0.01Down
Adult carcass88 ± 334 of 4 0.00Down
Larval CNS1362 ± 474 of 4 0.75Down
Larval Salivary gland27 ± 24 of 4 0.01Down
Larval midgut150 ± 304 of 4 0.08Down
Larval tubule65 ± 74 of 4 0.00Down
Larval hindgut120 ± 84 of 4 0.07Down
Larval fat body941 ± 4334 of 4 0.50None
Larval trachea526 ± 1014 of 4 0.29Down
Larval carcass352 ± 244 of 4 0.19Down
S2 cells (growing)2223 ± 584 of 4 1.22Up
Whole fly1825 ± 1144 of 4

Looking for FBgn0011823. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime