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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011824 through 18771 annotations produced 1 hits



(CG4038):

Annotation Number : CG4038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011824
Gbrowse : chr2R:16983446-16984808 (-) // 100.0 //
Probeset : 1628723_at
Accessions : protein= NP_477043;, nucleotide= NM_057695;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0011824.
BDGP gene expression has embryonic in situ data for CG4038: 15 pix of staining in 10 body parts.
BioGrid reports that CG4038 interacts with CG8262 .
TRiP has 1 RNAi stocks for FBgn0011824 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011824 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 44 of 4 0.20Down
Head181 64 of 4 0.30Down
Eye118 34 of 4 0.21Down
Thoracicoabdominal ganglion104 74 of 4 0.20Down
Salivary gland97 114 of 4 0.17Down
Crop271 74 of 4 0.50Down
Midgut328 124 of 4 0.60Down
Tubule125 254 of 4 0.20Down
Hindgut234 94 of 4 0.40Down
Heart215 184 of 4 0.39Down
Fat body215 404 of 4 0.39Down
Ovary932 224 of 4 1.70Up
Testis75 34 of 4 0.10Down
Male accessory glands754 584 of 4 1.40Up
Virgin spermatheca90 134 of 4 0.16Down
Mated spermatheca185 74 of 4 0.33Down
Adult carcass166 254 of 4 0.30Down
Larval CNS456 474 of 4 0.82None
Larval Salivary gland279 354 of 4 0.50Down
Larval midgut91 24 of 4 0.16Down
Larval tubule62 24 of 4 0.10Down
Larval hindgut171 164 of 4 0.31Down
Larval fat body112 104 of 4 0.20Down
Larval trachea692 1164 of 4 1.25None
Larval carcass286 564 of 4 0.52Down
S2 cells (growing)1013 134 of 4 1.82Up
Whole fly556 404 of 4

Looking for FBgn0011824. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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