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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011826 through 18771 annotations produced 1 hits



calcineurin (Pp2B-14D):

Annotation Number : CG9842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011826
Gbrowse : chrX:16450796-16454052 (-) // 100.0 //
Probeset : 1626781_at
Accessions : protein= NP_523373;, nucleotide= NM_078649;
Pathway : 0005955 // calcineurin complex // inferred from sequence or structural similarity /// 0005955 // calcineurin complex //
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0011826.
BioGrid reports that CG9842 interacts with CG9375 CG4200 CG6721 CG7672 CG4209 CG11217 CG1921 CG1921 .
TRiP has 2 RNAi stocks for FBgn0011826 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 ± 44 of 4 0.80Down
Head175 ± 84 of 4 0.60Down
Eye193 ± 74 of 4 0.69Down
Thoracicoabdominal ganglion162 ± 134 of 4 0.60Down
Salivary gland187 ± 104 of 4 0.67Down
Crop212 ± 194 of 4 0.80Down
Midgut155 ± 104 of 4 0.60Down
Tubule146 ± 74 of 4 0.50Down
Hindgut218 ± 74 of 4 0.80Down
Heart232 ± 94 of 4 0.83Down
Fat body326 ± 184 of 4 1.16Up
Ovary542 ± 44 of 4 1.90Up
Testis24 ± 24 of 4 0.10Down
Male accessory glands158 ± 24 of 4 0.60Down
Virgin spermatheca178 ± 34 of 4 0.63Down
Mated spermatheca189 ± 144 of 4 0.67Down
Adult carcass168 ± 54 of 4 0.60Down
Larval CNS243 ± 134 of 4 0.87Down
Larval Salivary gland130 ± 54 of 4 0.46Down
Larval midgut128 ± 14 of 4 0.46Down
Larval tubule264 ± 134 of 4 0.90None
Larval hindgut262 ± 114 of 4 0.93None
Larval fat body204 ± 284 of 4 0.70None
Larval trachea208 ± 194 of 4 0.74Down
Larval carcass193 ± 84 of 4 0.69Down
S2 cells (growing)207 ± 44 of 4 0.74Down
Whole fly281 ± 64 of 4

Looking for FBgn0011826. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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