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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011828 through 18771 annotations produced 2 hits



peroxidasin (Pxn):

Annotation Number : CG12002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011828
Gbrowse : chr3L:2601449-2630051 (-) // 100.0 //
Probeset : 1640097_at
Accessions : protein= NP_523891; /// NP_728759; /// NP_995975; /// NP_995976; /// NP_995977;, nucleotide= NM_079167; /// NM_167957; /// NM_206253; /// NM_206254; /// NM_206255;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
Interpro : 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity //
FlyMine data for FBgn0011828.
BDGP gene expression has embryonic in situ data for Pxn: 30 pix of staining in 8 body parts.
Homophila reports that CG12002 is a close match (6e-11) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
BioGrid reports that CG12002 interacts with CG6429 CG9976 .
VDRC has 3 RNAi stocks for FBgn0011828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain466 294 of 4 8.10Up
Head179 134 of 4 3.10Up
Eye57 74 of 4 1.00None
Thoracicoabdominal ganglion388 224 of 4 6.70Up
Salivary gland11 40 of 4 0.19Down
Crop741 504 of 412.80Up
Midgut15 01 of 4 0.30Down
Tubule13 01 of 4 0.20Down
Hindgut90 84 of 4 1.60Up
Heart443 404 of 4 7.67Up
Fat body34 83 of 4 0.59Down
Ovary21 33 of 4 0.40Down
Testis45 44 of 4 0.80None
Male accessory glands74 94 of 4 1.30None
Virgin spermatheca13 20 of 4 0.23Down
Mated spermatheca6 20 of 4 0.11Down
Adult carcass125 84 of 4 2.20Up
Larval CNS35 44 of 4 0.62Down
Larval Salivary gland12 30 of 4 0.22Down
Larval midgut20 22 of 4 0.35Down
Larval tubule40 74 of 4 0.70None
Larval hindgut140 144 of 4 2.43Up
Larval fat body78 184 of 4 1.30None
Larval trachea231 304 of 4 3.99Up
Larval carcass483 504 of 4 8.36Up
S2 cells (growing)309 334 of 4 5.35Up
Whole fly57 34 of 4



peroxidasin (Pxn):

Annotation Number : CG12002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011828
Gbrowse : chr3L:2609736-2630072 (-) // 100.0 //
Probeset : 1629847_at
Accessions : protein= NP_523891; /// NP_728759; /// NP_995975; /// NP_995976; /// NP_995977;, nucleotide= NM_079167; /// NM_167957; /// NM_206253; /// NM_206254; /// NM_206255;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
Interpro : 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity //
FlyMine data for FBgn0011828.
BDGP gene expression has embryonic in situ data for Pxn: 30 pix of staining in 8 body parts.
Homophila reports that CG12002 is a close match (6e-11) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
BioGrid reports that CG12002 interacts with CG6429 CG9976 .
VDRC has 3 RNAi stocks for FBgn0011828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 4.40None
Head4 10 of 4 7.30None
Eye1 00 of 4 2.77None
Thoracicoabdominal ganglion1 00 of 4 2.30None
Salivary gland4 10 of 4 8.09Up
Crop4 01 of 4 8.30Up
Midgut2 00 of 4 5.00Up
Tubule4 00 of 4 7.20Up
Hindgut4 11 of 4 7.90None
Heart2 11 of 4 5.27None
Fat body2 20 of 4 5.00None
Ovary3 00 of 4 5.60Up
Testis0 00 of 4 1.50None
Male accessory glands2 10 of 4 5.10None
Virgin spermatheca5 00 of 410.27Up
Mated spermatheca6 11 of 412.36Up
Adult carcass5 20 of 410.00None
Larval CNS1 10 of 4 2.82None
Larval Salivary gland7 10 of 414.32Up
Larval midgut5 20 of 410.27None
Larval tubule1 00 of 4 2.80None
Larval hindgut2 00 of 4 4.50None
Larval fat body2 10 of 4 5.30None
Larval trachea2 20 of 4 5.09None
Larval carcass5 00 of 410.27Up
S2 cells (growing)4 10 of 4 7.73Up
Whole fly0 00 of 4

Looking for FBgn0011828. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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