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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011829 through 18771 annotations produced 1 hits



Ret oncogene (Ret):

Annotation Number : CG14396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011829
Gbrowse : chr2L:21182393-21198745 (-) // 100.0 //
Probeset : 1622991_s_at
Accessions : protein= NP_477044; /// NP_477045; /// NP_724315; /// NP_724316; /// NP_724317;, nucleotide= NM_057696; /// NM_057697; /// NM_165358; /// NM_165359; /// NM_165360;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0011829.
Homophila reports that CG14396 is a close match (1e-11) to human gene ANKK1 (NP_848605), a gene associated with Dopamine receptor D2, reduced brain density of (3).
BioGrid reports that CG14396 interacts with CG3850 .
TRiP has 1 RNAi stocks for FBgn0011829 available for purchase.
VDRC has 7 RNAi stocks for FBgn0011829 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 24 of 4 1.60None
Head6 02 of 4 0.70None
Eye2 10 of 4 0.27Down
Thoracicoabdominal ganglion27 24 of 4 2.80Up
Salivary gland7 51 of 4 0.81None
Crop5 11 of 4 0.50None
Midgut4 10 of 4 0.50None
Tubule2 00 of 4 0.20Down
Hindgut3 00 of 4 0.30Down
Heart3 00 of 4 0.41Down
Fat body9 14 of 4 1.03None
Ovary26 34 of 4 2.70Up
Testis3 02 of 4 0.40Down
Male accessory glands7 21 of 4 0.80None
Virgin spermatheca19 24 of 4 2.03Up
Mated spermatheca21 24 of 4 2.24Up
Adult carcass4 20 of 4 0.50None
Larval CNS55 94 of 4 5.81Up
Larval Salivary gland9 11 of 4 0.96None
Larval midgut45 44 of 4 4.69Up
Larval tubule23 24 of 4 2.40Up
Larval hindgut11 04 of 4 1.20None
Larval fat body5 21 of 4 0.50None
Larval trachea14 34 of 4 1.51None
Larval carcass19 34 of 4 2.02None
S2 cells (growing)5 03 of 4 0.62None
Whole fly9 14 of 4

Looking for FBgn0011829. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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