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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011832 through 18771 annotations produced 1 hits

Serine protease 12 (Ser12):

Annotation Number : CG17240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011832
Gbrowse : chr2L:2250532-2251270 (-) // 100.0 //
Probeset : 1631529_at
Accessions : protein= NP_523456;, nucleotide= NM_078732;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004180 // carboxypeptidase activity // inferre
FlyMine data for FBgn0011832.
Homophila reports that CG17240 is a close match (4e-13) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
TRiP has 1 RNAi stocks for FBgn0011832 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011832 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head4 10 of 4 0.00Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion5 01 of 4 0.00Down
Salivary gland19 31 of 4 0.12Down
Crop6 10 of 4 0.00Down
Midgut6 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut6 00 of 4 0.00Down
Heart3 10 of 4 0.02Down
Fat body27 202 of 4 0.17Down
Ovary2 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands4 20 of 4 0.00Down
Virgin spermatheca4226 1984 of 426.40Up
Mated spermatheca4394 1904 of 427.45Up
Adult carcass58 342 of 4 0.40None
Larval CNS3 20 of 4 0.02Down
Larval Salivary gland6 20 of 4 0.04Down
Larval midgut3 00 of 4 0.02Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut5 00 of 4 0.04Down
Larval fat body6 10 of 4 0.00Down
Larval trachea1 10 of 4 0.01Down
Larval carcass3 10 of 4 0.02Down
S2 cells (growing)1 10 of 4 0.01Down
Whole fly160 154 of 4

Looking for FBgn0011832. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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