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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0011834 through 18771 annotations produced 1 hits


Serine protease 6 (Ser6):

Annotation Number : CG2071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011834
Gbrowse : chrX:20833629-20834528 (-) // 100.0 //
Probeset : 1639903_at
Accessions : protein= NP_523426;, nucleotide= NM_078702;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0011834.
BDGP gene expression has embryonic in situ data for Ser6: 8 pix of staining in 1 body parts.
Homophila reports that CG2071 is a close match (7e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
TRiP has 1 RNAi stocks for FBgn0011834 available for purchase.
VDRC has 5 RNAi stocks for FBgn0011834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye3 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.10Down
Salivary gland12 ± 10 of 4 0.14Down
Crop2 ± 10 of 4 0.00Down
Midgut1060 ± 544 of 411.60Up
Tubule17 ± 71 of 4 0.20Down
Hindgut273 ± 154 of 4 3.00Up
Heart4 ± 10 of 4 0.05Down
Fat body6 ± 30 of 4 0.07Down
Ovary3 ± 10 of 4 0.00Down
Testis4 ± 10 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.04Down
Adult carcass7 ± 40 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 20 of 4 0.05Down
Larval midgut669 ± 734 of 4 7.33Up
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut52 ± 24 of 4 0.57None
Larval fat body3 ± 00 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.05Down
Larval carcass4 ± 20 of 4 0.05Down
S2 cells (growing)4 ± 10 of 4 0.05Down
Whole fly91 ± 214 of 4

Looking for FBgn0011834. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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