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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0011836 through 18771 annotations produced 1 hits



chr3L:9877504-9881781 (-) // 100.0 // (TBP-associated factor 150kD):

Annotation Number : CG6711
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629974_at
Accessions : protein= , nucleotide= NP_729571;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 64 of 4 0.90None
Head43 34 of 4 0.60Down
Eye25 04 of 4 0.35Down
Thoracicoabdominal ganglion57 44 of 4 0.80None
Salivary gland43 13 of 4 0.60Down
Crop54 44 of 4 0.70None
Midgut37 12 of 4 0.50Down
Tubule52 24 of 4 0.70Down
Hindgut51 34 of 4 0.70Down
Heart34 14 of 4 0.47Down
Fat body42 73 of 4 0.58Down
Ovary147 64 of 4 2.00Up
Testis65 44 of 4 0.90None
Male accessory glands79 64 of 4 1.10None
Virgin spermatheca40 24 of 4 0.55Down
Mated spermatheca53 34 of 4 0.73Down
Adult carcass35 41 of 4 0.50Down
Larval CNS124 144 of 4 1.71Up
Larval Salivary gland106 64 of 4 1.46Up
Larval midgut24 24 of 4 0.34Down
Larval tubule37 34 of 4 0.50Down
Larval hindgut50 14 of 4 0.69Down
Larval fat body43 34 of 4 0.60Down
Larval trachea85 54 of 4 1.17None
Larval carcass52 64 of 4 0.72None
S2 cells (growing)98 74 of 4 1.34Up
Whole fly73 64 of 4

Looking for FBgn0011836. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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